Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0267400-01 | Rice | plasma membrane | 57.85 | 66.67 |
| PGSC0003DMT400047270 | Potato | cytosol | 29.75 | 33.49 |
| KRH26927 | Soybean | cytosol | 22.73 | 33.13 |
| KRH22411 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 29.34 | 30.6 |
| PGSC0003DMT400047271 | Potato | cytosol, golgi, plasma membrane | 28.1 | 30.36 |
| Os04t0677300-01 | Rice | plastid | 29.34 | 27.84 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 29.34 | 25.72 |
| Os02t0507900-00 | Rice | cytosol | 26.45 | 25.6 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 28.93 | 25.45 |
| Solyc07g054250.2.1 | Tomato | cytosol, nucleus, plastid | 27.27 | 24.35 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 31.41 | 21.9 |
Protein Annotations
| EnsemblPlants:Os08t0324200-01 | EnsemblPlantsGene:Os08g0324200 | EntrezGene:4345274 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF30 | PFAM:PF03168 | ProteinID:BAD03245.1 | ProteinID:BAD03668.1 |
| ProteinID:BAF23459.1 | ProteinID:BAT04891.1 | ProteinID:EAZ42310.1 | RefSeq:XP_015649640.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0000226074 | UniProt:Q6Z0E0 | MapMan:35.1 | : | : | : |
Description
OsSTA209Harpin-induced 1 domain containing protein. (Os08t0324200-01)
Coordinates
chr8:+:14207881..14208776
Molecular Weight (calculated)
25724.9 Da
IEP (calculated)
8.191
GRAVY (calculated)
0.005
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYDGGSGPS KPPPPPRYVM LTEEYGSSSL ATVPPGASRN MPRHRITDGG SLRGCLCWCC CFLLLLVVAV AATSAYLLYA CRPKAPSYSV SDMSVARFDV
101: SSSDLTVYAK LVASVRAENP NDMVGIGYGA GSRAAVSYRG TTLCSGRLPA FYQGHRNTTV VRVAMEGRHG FGPGLQGALE ESEEAGNVPL DVYVSAPVTL
201: RLGDVDLREV TVNVHCALVV DGLSPKKKPA IKSAEYRVNV EF
101: SSSDLTVYAK LVASVRAENP NDMVGIGYGA GSRAAVSYRG TTLCSGRLPA FYQGHRNTTV VRVAMEGRHG FGPGLQGALE ESEEAGNVPL DVYVSAPVTL
201: RLGDVDLREV TVNVHCALVV DGLSPKKKPA IKSAEYRVNV EF
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.