CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16419	Canola	plastid	94.35	94.35
AT1G65690.1	Thale cress	plasma membrane, plastid	83.06	81.75
CDX74604	Canola	cytosol, nucleus, plasma membrane	70.16	68.24
CDY53530	Canola	cytosol, nucleus, plasma membrane	70.16	68.24
VIT_04s0069g01010.t01	Wine grape	plasma membrane	58.06	57.37
CDY26995	Canola	cytosol	70.16	56.68
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	57.26	55.69
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	58.06	55.38
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	54.44	55.33
KRH30725	Soybean	cytosol, nucleus, plasma membrane	54.44	54.88
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	52.02	52.44
PGSC0003DMT400055257	Potato	plasma membrane, plastid	53.23	50.97
Solyc02g036480.1.1	Tomato	nucleus	52.42	50.78
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	50.81	48.46
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	47.98	47.04
GSMUA_Achr3P14210_001	Banana	plasma membrane	44.76	45.87
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	47.98	45.77
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	48.39	45.11
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	43.15	44.58
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	47.58	44.36
GSMUA_Achr1P17720_001	Banana	plasma membrane	43.55	39.71
Os04t0677300-01	Rice	plastid	40.73	39.61
KXG38271	Sorghum	cytosol, nucleus, vacuole	43.55	39.13
EES13101	Sorghum	cytosol	38.71	38.87
OQU85155	Sorghum	extracellular, plasma membrane	30.65	38.78
TraesCS2A01G593300.1	Wheat	peroxisome	39.11	38.34
Zm00001d013947_P001	Maize	cytosol	40.73	38.11
HORVU2Hr1G119500.1	Barley	peroxisome	38.71	38.1
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	49.6	37.73
Zm00001d032620_P001	Maize	cytosol	41.53	37.59
TraesCS2D01G561400.1	Wheat	peroxisome	38.31	37.55
Zm00001d001832_P001	Maize	plastid	37.9	37.45
TraesCS2B01G591000.1	Wheat	peroxisome	38.31	37.4
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	32.26	35.4
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	31.45	34.51
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.65	34.39
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	31.85	34.05
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.24	33.33
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	31.45	33.33
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.24	33.19
OQU90204	Sorghum	mitochondrion, plastid	29.03	33.03
CDX83252	Canola	cytosol, peroxisome, plasma membrane	32.26	31.25
EES06862	Sorghum	peroxisome	29.44	30.93
CDY38543	Canola	cytosol, peroxisome, plasma membrane	31.45	30.47
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	31.85	30.38
CDY48196	Canola	cytosol, peroxisome, plasma membrane	30.65	29.23
Os02t0507900-00	Rice	cytosol	29.44	29.2
CDY38564	Canola	plasma membrane	72.18	28.23
HORVU4Hr1G018720.1	Barley	cytosol	14.92	23.72
CDY09101	Canola	cytosol	27.82	23.55
CDY09100	Canola	cytosol	27.02	22.11
CDX70963	Canola	cytosol	26.61	21.85
OQU88420	Sorghum	mitochondrion	29.44	20.92
CDX88825	Canola	cytosol	25.0	20.53

Protein Annotations

EnsemblPlants:CDY72163	EnsemblPlantsGene:GSBRNA2T00025382001	GO:A0A078JWZ4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF48	PFAM:PF03168	ProteinID:CDY72163	ProteinID:CDY72163.1
SEG:seg	SUPFAM:SSF117070	TMHMM:TMhelix	UniParc:UPI0004EF4912	UniProt:A0A078JWZ4	MapMan:35.1

Description

BnaCnng76260DBnaCnng76260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWZ4]

Coordinates

chrLK049326:+:1035..2091

Molecular Weight (calculated)

27654.7 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.166

Length

248 amino acids

Sequence
(BLAST)

001: MSRHPKIHPE APSARASAPL VPRAASRSEQ GDPAKDVLTQ RSTYVPLAPP RKRGRSCCCR CVCYTLCLFL LLVVAVGATI GILYLVFKPK LPDYSIDRLQ
101: LTQFALNQDS SLSTAFNVTI TAKNPNEKIG IYYEDGSKIT VWYNETKLSE GSLPKFYQGH ENTTVIDVEM SGQTQDAAGI MTTLEEQQQT TGNIPLRLRV
201: DQPVRIKFGK LKLMEVRFLV RCGVFVDSLA PNNVIKIQSS SCKFRLRL

Best Arabidopsis Sequence Match ( AT1G65690.1 )
(BLAST)

001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL

Arabidopsis Description

NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.