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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020147.1-P Field mustard cytosol 97.03 97.03
CDY09101 Canola cytosol 84.16 87.03
CDX70963 Canola cytosol 64.69 64.9
CDX88825 Canola cytosol 64.36 64.57
AT5G21130.1 Thale cress cytosol 57.1 61.57
CDY48196 Canola cytosol, peroxisome, plasma membrane 38.94 45.38
CDX77067 Canola cytosol, peroxisome, plasma membrane, plastid 38.28 44.62
Solyc01g009160.2.1 Tomato plastid 35.97 41.29
PGSC0003DMT400005086 Potato plastid 35.64 41.06
CDX83252 Canola cytosol, peroxisome, plasma membrane 33.66 39.84
CDY38543 Canola cytosol, peroxisome, plasma membrane 33.66 39.84
PGSC0003DMT400022474 Potato plastid 35.31 39.63
KRH73453 Soybean plastid 35.64 39.56
KRH14686 Soybean plastid 35.31 39.19
VIT_06s0009g01620.t01 Wine grape plasma membrane, plastid 33.66 38.2
GSMUA_Achr11P... Banana cytosol, peroxisome, vacuole 32.01 36.19
Os11t0130400-01 Rice extracellular, peroxisome, vacuole 32.34 35.51
Os12t0127200-01 Rice extracellular, plasma membrane, vacuole 31.68 34.91
TraesCS4D01G124700.1 Wheat cytosol, extracellular, plasma membrane 30.69 33.94
GSMUA_Achr3P03620_001 Banana cytosol, peroxisome, vacuole 29.37 33.71
OQU87732 Sorghum cytosol 32.67 33.56
TraesCSU01G191800.1 Wheat cytosol, extracellular, plasma membrane 30.03 33.46
TraesCSU01G059700.1 Wheat cytosol, extracellular, plasma membrane 30.03 33.46
TraesCS5A01G141200.1 Wheat cytosol, extracellular, peroxisome 31.35 33.45
TraesCS5D01G151200.1 Wheat cytosol, extracellular, plasma membrane 31.35 33.33
TraesCS2A01G489400.1 Wheat cytosol, extracellular, plasma membrane 29.04 32.96
TraesCS5B01G139500.1 Wheat cytosol, extracellular, peroxisome 30.69 32.86
TraesCS2A01G489300.1 Wheat cytosol, extracellular, plasma membrane 28.71 32.83
TraesCS4B01G128000.1 Wheat cytosol, extracellular, plasma membrane 29.37 32.48
Zm00001d005010_P001 Maize plastid 30.36 32.39
TraesCS3A01G336800.1 Wheat cytosol 30.69 31.74
EES15581 Sorghum cytosol, mitochondrion, peroxisome 31.68 31.48
HORVU4Hr1G026770.2 Barley cytosol, plasma membrane 30.69 30.79
HORVU0Hr1G010640.1 Barley cytosol, peroxisome 31.02 30.72
TraesCS3D01G329800.1 Wheat cytosol 30.69 30.29
Zm00001d043128_P001 Maize cytosol 29.37 30.07
TraesCS1B01G251100.1 Wheat endoplasmic reticulum, plasma membrane, plastid 24.09 29.08
TraesCS3B01G367900.1 Wheat cytosol, endoplasmic reticulum, peroxisome, plastid 30.36 27.88
Os01t0812100-01 Rice cytosol, mitochondrion, peroxisome 31.35 27.38
CDY72163 Canola plastid 22.11 27.02
CDY16419 Canola plastid 21.45 26.21
CDX74604 Canola cytosol, nucleus, plasma membrane 21.12 25.1
CDY53530 Canola cytosol, nucleus, plasma membrane 21.12 25.1
HORVU3Hr1G079540.2 Barley plastid 32.01 24.62
EES09185 Sorghum plastid 32.01 24.49
HORVU5Hr1G058740.3 Barley cytosol, plastid 13.53 24.26
HORVU6Hr1G013910.1 Barley mitochondrion 27.39 22.13
Zm00001d028765_P001 Maize plastid 22.11 21.47
CDY26995 Canola cytosol 20.79 20.52
CDY38564 Canola plasma membrane 21.45 10.25
Protein Annotations
EnsemblPlants:CDY09100EnsemblPlantsGene:GSBRNA2T00001317001GO:A0A078F3N0GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LEA_2PANTHER:PTHR31852PANTHER:PTHR31852:SF0PFAM:PF03168ProteinID:CDY09100ProteinID:CDY09100.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EDF682UniProt:A0A078F3N0MapMan:35.1:
Description
BnaA02g05260DBnaA02g05260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3N0]
Coordinates
chrLK031993:+:98265..99207
Molecular Weight (calculated)
33037.6 Da
IEP (calculated)
9.953
GRAVY (calculated)
-0.255
Length
303 amino acids
Sequence
(BLAST)
001: MGGDDSSQGS PKSTDVFITD KNIRKTKHLS IDTNDSVPQS PTSSGGFTNA SRFSGGFTNA SRYSGDSQRP KPPPPGTYLV QIPKEQIYRI PPPENARRYE
101: YLSRRKPNRS ACRRCCCYSL AALLVLATLA AALVGIFFLV FRPHKPTFSV SEVSVAGINL TSSTSLISPL IKIKVRSENV NEKLGLIYGG GSAAEIFYDG
201: AKLGDGEFTA FDQPPENVTV TVTTLRGSRI QNPLAKKKDL KESEKKGKVP FDLRVRAPFK FKVSAVTMWT MAVTVDCKLT VDKLTSSATV LTENCVTEDI
301: ILL
Best Arabidopsis Sequence Match ( AT5G21130.1 )
(BLAST)
001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.