Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 98.43 | 98.43 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 98.04 | 98.04 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 83.92 | 86.29 |
| CDY26995 | Canola | cytosol | 85.88 | 71.34 |
| CDY16419 | Canola | plastid | 68.24 | 70.16 |
| CDY72163 | Canola | plastid | 68.24 | 70.16 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 54.51 | 55.38 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 54.51 | 54.51 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 55.29 | 54.23 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 53.33 | 52.51 |
| Solyc02g036480.1.1 | Tomato | nucleus | 52.55 | 52.34 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 47.84 | 49.59 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 47.84 | 49.59 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 46.27 | 48.36 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 47.06 | 46.15 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 42.75 | 45.42 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 43.92 | 44.27 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 41.57 | 43.8 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 45.1 | 43.23 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 43.92 | 43.08 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 44.71 | 42.86 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 43.14 | 40.44 |
| EES13101 | Sorghum | cytosol | 36.86 | 38.06 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 41.18 | 38.04 |
| Zm00001d032620_P001 | Maize | cytosol | 40.0 | 37.23 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 36.47 | 36.9 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 36.47 | 36.76 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 36.47 | 36.76 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 28.24 | 36.73 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 46.67 | 36.5 |
| Zm00001d013947_P001 | Maize | cytosol | 37.65 | 36.23 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 36.08 | 36.22 |
| Os04t0677300-01 | Rice | plastid | 36.08 | 36.08 |
| Zm00001d001832_P001 | Maize | plastid | 35.29 | 35.86 |
| CDY38564 | Canola | plasma membrane | 86.27 | 34.7 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 29.02 | 32.74 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.24 | 32.58 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.63 | 32.44 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.41 | 32.33 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.63 | 32.3 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.63 | 32.3 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 29.41 | 32.05 |
| OQU90204 | Sorghum | mitochondrion, plastid | 27.06 | 31.65 |
| EES06862 | Sorghum | peroxisome | 27.84 | 30.08 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 29.8 | 29.69 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 30.2 | 29.62 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 30.2 | 29.62 |
| Os02t0507900-00 | Rice | cytosol | 28.63 | 29.2 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 29.02 | 28.91 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 14.51 | 23.72 |
| CDY09101 | Canola | cytosol | 25.1 | 21.84 |
| OQU88420 | Sorghum | mitochondrion | 29.02 | 21.2 |
| CDY09100 | Canola | cytosol | 25.1 | 21.12 |
| CDX88825 | Canola | cytosol | 24.31 | 20.53 |
| CDX70963 | Canola | cytosol | 24.31 | 20.53 |
Protein Annotations
| EnsemblPlants:CDX74604 | EnsemblPlantsGene:GSBRNA2T00114564001 | GO:A0A078CEP8 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF1 |
| PFAM:PF03168 | ProteinID:CDX74604 | ProteinID:CDX74604.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEBF23 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA04g07850D
Coordinates
chrLK031801:+:1917145..1918281
Molecular Weight (calculated)
28738.1 Da
IEP (calculated)
10.254
GRAVY (calculated)
-0.159
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEHLKIHPV SDPEAPLPPT HPTVPLVSRS SSRSEHGETT KESVTQPPQL DSPQRKKKGR RSCWCRCVCY TLLVLFLLIV VVGAAVGILY LVFRPKLPDY
101: NIDRLQLTRS ILNNQDSSLS TAFNVTITAK NPNEKIGIYY EDGSKISVLY MQTRLSNGSL PKFYQGHENT TIIFVEMTGY TQNATSLMAT LLEQQQLTGS
201: IPLRIRVTQP VRIKLGKLKL PEVKFFVRCG VFVDSLAANS VIRVRNSNCK FRFRL
101: NIDRLQLTRS ILNNQDSSLS TAFNVTITAK NPNEKIGIYY EDGSKISVLY MQTRLSNGSL PKFYQGHENT TIIFVEMTGY TQNATSLMAT LLEQQQLTGS
201: IPLRIRVTQP VRIKLGKLKL PEVKFFVRCG VFVDSLAANS VIRVRNSNCK FRFRL
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Arabidopsis Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]
SUBAcon: [peroxisome,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.