Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 93.75 | 93.75 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 83.59 | 82.31 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 82.81 | 81.54 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 80.47 | 79.23 |
| KRH14686 | Soybean | plastid | 54.3 | 50.92 |
| PGSC0003DMT400005086 | Potato | plastid | 51.95 | 50.57 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 52.34 | 50.19 |
| KRH73453 | Soybean | plastid | 52.73 | 49.45 |
| PGSC0003DMT400022474 | Potato | plastid | 50.78 | 48.15 |
| Solyc01g009160.2.1 | Tomato | plastid | 46.88 | 45.45 |
| CDX70963 | Canola | cytosol | 44.14 | 37.42 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 38.67 | 36.94 |
| CDX88825 | Canola | cytosol | 43.36 | 36.76 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 37.89 | 36.74 |
| OQU87732 | Sorghum | cytosol | 40.23 | 34.92 |
| CDY09101 | Canola | cytosol | 39.84 | 34.81 |
| CDY09100 | Canola | cytosol | 39.84 | 33.66 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 35.94 | 33.45 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 38.28 | 33.45 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 39.45 | 32.9 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 32.03 | 32.67 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 35.16 | 32.61 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 33.2 | 32.08 |
| TraesCSU01G191800.1 | Wheat | cytosol, extracellular, plasma membrane | 33.98 | 31.99 |
| TraesCSU01G059700.1 | Wheat | cytosol, extracellular, plasma membrane | 33.98 | 31.99 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 33.2 | 31.84 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 33.98 | 31.75 |
| CDY16419 | Canola | plastid | 30.47 | 31.45 |
| CDY72163 | Canola | plastid | 30.47 | 31.45 |
| Zm00001d043128_P001 | Maize | cytosol | 36.33 | 31.42 |
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 33.2 | 31.02 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 34.38 | 30.88 |
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 33.98 | 30.63 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 38.67 | 30.0 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 29.69 | 29.8 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 29.69 | 29.8 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 32.42 | 29.33 |
| Zm00001d005010_P001 | Maize | plastid | 32.42 | 29.23 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 34.38 | 28.85 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 39.06 | 28.82 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 33.59 | 28.48 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 33.98 | 28.43 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 18.75 | 28.4 |
| HORVU3Hr1G079540.2 | Barley | plastid | 39.84 | 25.89 |
| CDY26995 | Canola | cytosol | 28.91 | 24.1 |
| EES09185 | Sorghum | plastid | 35.94 | 23.23 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 30.08 | 20.53 |
| Zm00001d028765_P001 | Maize | plastid | 24.61 | 20.19 |
| CDY38564 | Canola | plasma membrane | 29.69 | 11.99 |
Protein Annotations
| EnsemblPlants:CDY38543 | EnsemblPlantsGene:GSBRNA2T00066203001 | GO:A0A078HP45 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF0 | PFAM:PF03168 | ProteinID:CDY38543 | ProteinID:CDY38543.1 |
| TMHMM:TMhelix | UniParc:UPI0004EEC68F | UniProt:A0A078HP45 | MapMan:35.1 | : | : |
Description
BnaC03g26540DBnaC03g26540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP45]
Coordinates
chrLK032425:+:330102..330872
Molecular Weight (calculated)
28464.6 Da
IEP (calculated)
9.588
GRAVY (calculated)
0.023
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERVYPADS PPVSGQFSDN FSSGEFPRKP ATYVIQVPKD QIYYVPPPEN AHRFQHLSQK KVHRSRCRCC FCSVLAAIFI LIVLAGISLA VIYLVFCPEA
101: PKYYVEGFSV SGINLLSPSP NSPIFNVTVM SRNGNGKIGI YYEKGSTVDV FYEDVDLCNG ALPVFYQPAK NVTVVKTVLT GSKIQLTSGI RKEMRNDLSR
201: KSFPFKLKIR APVKIKIGFV KTWTITVNVN CDVTVDKLAA PSRIVSGKCS HDVDLW
101: PKYYVEGFSV SGINLLSPSP NSPIFNVTVM SRNGNGKIGI YYEKGSTVDV FYEDVDLCNG ALPVFYQPAK NVTVVKTVLT GSKIQLTSGI RKEMRNDLSR
201: KSFPFKLKIR APVKIKIGFV KTWTITVNVN CDVTVDKLAA PSRIVSGKCS HDVDLW
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.