Factsheet for GSMUA_Achr3P03620_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 2
vacuole 2
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	golgi, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	72.35	71.27
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	45.08	44.57
PGSC0003DMT400005086	Potato	plastid	43.56	43.73
KRH14686	Soybean	plastid	45.08	43.59
KRH73453	Soybean	plastid	44.32	42.86
PGSC0003DMT400022474	Potato	plastid	43.18	42.22
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	41.29	41.92
CDY48196	Canola	cytosol, peroxisome, plasma membrane	40.91	41.54
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	39.77	40.38
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	41.29	39.64
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	40.91	39.13
OQU87732	Sorghum	cytosol	43.56	38.98
CDX83252	Canola	cytosol, peroxisome, plasma membrane	37.12	38.28
Solyc01g009160.2.1	Tomato	plastid	38.26	38.26
CDY38543	Canola	cytosol, peroxisome, plasma membrane	36.74	37.89
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.74	37.89
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	36.74	37.31
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	39.77	36.84
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	39.39	36.75
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	39.39	36.62
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	36.74	36.6
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	36.74	36.33
TraesCS3A01G336800.1	Wheat	cytosol	40.15	36.18
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	37.12	35.77
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	36.74	35.66
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	36.74	35.66
Zm00001d043128_P001	Maize	cytosol	39.39	35.14
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	31.82	35.0
TraesCS3D01G329800.1	Wheat	cytosol	40.53	34.85
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	32.95	34.66
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	39.77	34.43
HORVU5Hr1G058740.3	Barley	cytosol, plastid	21.97	34.32
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	35.61	34.31
Zm00001d005010_P001	Maize	plastid	36.74	34.15
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	39.39	33.99
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	31.44	33.74
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	40.91	32.73
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	42.8	32.56
GSMUA_Achr3P14210_001	Banana	plasma membrane	29.55	32.23
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	36.74	32.12
CDY09101	Canola	cytosol	35.23	31.74
Bra020148.1-P	Field mustard	cytosol	34.09	30.72
CDX70963	Canola	cytosol	34.09	29.8
Bra006594.1-P	Field mustard	nucleus	34.09	29.8
CDX88825	Canola	cytosol	34.09	29.8
Bra020147.1-P	Field mustard	cytosol	34.09	29.7
AT5G21130.1	Thale cress	cytosol	31.44	29.54
CDY09100	Canola	cytosol	33.71	29.37
GSMUA_Achr1P17720_001	Banana	plasma membrane	29.17	28.31
HORVU3Hr1G079540.2	Barley	plastid	42.05	28.17
Zm00001d028765_P001	Maize	plastid	32.2	27.24
EES09185	Sorghum	plastid	38.64	25.76
HORVU6Hr1G013910.1	Barley	mitochondrion	35.98	25.33

Protein Annotations

EnsemblPlants:GSMUA_Achr3P03620_001	EnsemblPlants:GSMUA_Achr3T03620_001	EnsemblPlantsGene:GSMUA_Achr3G03620_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF0	PFAM:PF03168	SEG:seg	TMHMM:TMhelix
UniParc:UPI000294E28D	UniProt:M0SBI0	MapMan:35.1	:	:	:

Description

NHL25, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G03620_001]

Coordinates

chr3:+:2349776..2350570

Molecular Weight (calculated)

28592.9 Da

IEP (calculated)

10.405

GRAVY (calculated)

0.166

Length

264 amino acids

Sequence
(BLAST)

001: MADRVHPVQP EPATGPIPDP WESPRSSASS QSILPKPVRQ PGSYVIQVPR DLVLRVPPKG NGSRAKAYAR RRGCCFLVFA WLGALLFLLA VVADILYLVF
101: RPRVPQYSID ALSIASFNLS AASVSPAFDA TVRAENPNKK VGIYYRDGSD ITVAYDGVTL CTGAWLAFYQ SPGNVTVFVA ALKGSTIRLS SAARQALVTA
201: ETQRQVPLEI DVKVPVRIKF GGVTSWTITV KLKCDVTVTG LTENAKIVSK KCGVKVKLFK FLGL

Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)

001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW

Arabidopsis Description

NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.