Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 97.39 | 90.61 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 86.32 | 90.44 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 64.17 | 78.49 |
| HORVU3Hr1G079540.2 | Barley | plastid | 94.14 | 73.35 |
| OQU87732 | Sorghum | cytosol | 67.1 | 69.83 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 37.13 | 67.46 |
| Zm00001d043128_P001 | Maize | cytosol | 64.5 | 66.89 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 71.34 | 63.11 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 68.4 | 56.0 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 39.41 | 45.15 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 39.74 | 44.53 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 41.04 | 44.21 |
| KRH73453 | Soybean | plastid | 37.46 | 42.12 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 34.85 | 41.15 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 34.85 | 41.15 |
| KRH14686 | Soybean | plastid | 36.16 | 40.66 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 34.85 | 40.53 |
| Zm00001d028765_P001 | Maize | plastid | 41.04 | 40.38 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 33.55 | 39.62 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 32.9 | 39.45 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 32.9 | 39.45 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 32.25 | 38.67 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 32.57 | 37.45 |
| PGSC0003DMT400022474 | Potato | plastid | 32.9 | 37.41 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.27 | 36.92 |
| PGSC0003DMT400005086 | Potato | plastid | 31.27 | 36.5 |
| Solyc01g009160.2.1 | Tomato | plastid | 30.62 | 35.61 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 28.66 | 33.08 |
| AT5G21130.1 | Thale cress | cytosol | 29.32 | 32.03 |
| CDY09100 | Canola | cytosol | 30.29 | 30.69 |
| Bra006594.1-P | Field mustard | nucleus | 29.97 | 30.46 |
| CDX88825 | Canola | cytosol | 29.97 | 30.46 |
| Bra020147.1-P | Field mustard | cytosol | 29.97 | 30.36 |
| CDX70963 | Canola | cytosol | 29.64 | 30.13 |
| CDY09101 | Canola | cytosol | 28.66 | 30.03 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 20.2 | 29.67 |
| Bra020148.1-P | Field mustard | cytosol | 28.01 | 29.35 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 20.52 | 28.0 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 22.48 | 27.27 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 19.87 | 26.99 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G329800.1 | EnsemblPlantsGene:TraesCS3D01G329800 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF0 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:442511403..442512326
Molecular Weight (calculated)
33013.5 Da
IEP (calculated)
10.152
GRAVY (calculated)
-0.083
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQIDSHARR EEQERPMMND GRVHPAATSS DFSGEYAYSS SDPSSSPLYS FHFEKPVPPP PQHHNKPQPG TYVVQVPKDK VFRVPPPENA RLFQHYTRRA
101: KRRAGCSCLR ACIYLAVAIL SLAVLLAAAV GAVYLAFKPR QPAYSVVSLA VSGLAGVGNA SAPGALSPGF AATVRADNSA NGKVGVHYDG AGSRVAVSYE
201: GVSLADGAWP AFYQAPSNIT VFVAKAKGTG IRFSERERGQ MAAAERLRSV PFDVDITVPV RLQLGGLKTW AVPVTVRCAM AVDRLAASAK VVSRSCDVKV
301: PFLFWRN
101: KRRAGCSCLR ACIYLAVAIL SLAVLLAAAV GAVYLAFKPR QPAYSVVSLA VSGLAGVGNA SAPGALSPGF AATVRADNSA NGKVGVHYDG AGSRVAVSYE
201: GVSLADGAWP AFYQAPSNIT VFVAKAKGTG IRFSERERGQ MAAAERLRSV PFDVDITVPV RLQLGGLKTW AVPVTVRCAM AVDRLAASAK VVSRSCDVKV
301: PFLFWRN
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.