Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020147.1-P | Field mustard | cytosol | 62.28 | 57.76 |
| Bra006594.1-P | Field mustard | nucleus | 61.92 | 57.62 |
| CDY09101 | Canola | cytosol | 59.79 | 57.34 |
| CDY09100 | Canola | cytosol | 61.57 | 57.1 |
| Bra020148.1-P | Field mustard | cytosol | 59.43 | 57.0 |
| CDX88825 | Canola | cytosol | 61.21 | 56.95 |
| CDX70963 | Canola | cytosol | 60.14 | 55.96 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 44.48 | 48.08 |
| PGSC0003DMT400005086 | Potato | plastid | 39.86 | 42.59 |
| KRH73453 | Soybean | plastid | 40.21 | 41.39 |
| PGSC0003DMT400022474 | Potato | plastid | 39.5 | 41.11 |
| KRH14686 | Soybean | plastid | 39.5 | 40.66 |
| Solyc01g009160.2.1 | Tomato | plastid | 38.08 | 40.53 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 38.08 | 40.07 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 30.96 | 32.46 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 31.32 | 31.88 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 30.96 | 31.75 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 29.89 | 31.7 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 30.96 | 31.64 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 29.89 | 31.46 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 29.54 | 31.44 |
| TraesCSU01G059700.1 | Wheat | cytosol, extracellular, plasma membrane | 29.89 | 30.88 |
| TraesCSU01G191800.1 | Wheat | cytosol, extracellular, plasma membrane | 29.89 | 30.88 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 31.67 | 30.38 |
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 30.61 | 30.28 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 30.61 | 30.18 |
| OQU87732 | Sorghum | cytosol | 31.32 | 29.83 |
| Zm00001d005010_P001 | Maize | plastid | 29.89 | 29.58 |
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 28.83 | 29.56 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 29.54 | 29.33 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 32.03 | 29.32 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 30.61 | 28.48 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 30.61 | 28.2 |
| Zm00001d043128_P001 | Maize | cytosol | 29.54 | 28.04 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 30.25 | 27.78 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 32.03 | 27.27 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 24.2 | 27.09 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 22.06 | 25.94 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 30.61 | 24.78 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 22.06 | 24.6 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 14.59 | 24.26 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 21.35 | 24.19 |
| HORVU3Hr1G079540.2 | Barley | plastid | 33.45 | 23.86 |
| EES09185 | Sorghum | plastid | 31.67 | 22.47 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 25.27 | 18.93 |
| Zm00001d028765_P001 | Maize | plastid | 19.57 | 17.63 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832239 | ProteinID:AAO73890.1 | ProteinID:AED92938.1 | ArrayExpress:AT5G21130 | EnsemblPlantsGene:AT5G21130 |
| RefSeq:AT5G21130 | TAIR:AT5G21130 | RefSeq:AT5G21130-TAIR-G | EnsemblPlants:AT5G21130.1 | TAIR:AT5G21130.1 | EMBL:AY735684 |
| Unigene:At.51062 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | RefSeq:NP_197612.1 | PFAM:PF03168 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF0 | UniProt:Q84VP8 |
| TMHMM:TMhelix | UniParc:UPI00000561FF | SEG:seg | : | : | : |
Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
Coordinates
chr5:+:7185897..7186919
Molecular Weight (calculated)
30936.5 Da
IEP (calculated)
10.345
GRAVY (calculated)
-0.257
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.