Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- peroxisome 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 78.66 | 69.89 |
| KRG92519 | Soybean | cytosol | 55.65 | 53.2 |
| KRH34277 | Soybean | plasma membrane | 55.65 | 52.78 |
| PGSC0003DMT400039340 | Potato | plastid | 51.46 | 47.67 |
| Solyc03g019920.1.1 | Tomato | plastid | 48.54 | 46.96 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 55.65 | 46.18 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 45.19 | 43.9 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 41.0 | 40.83 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 41.84 | 39.68 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 41.0 | 39.52 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 39.75 | 39.26 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 41.42 | 39.13 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 42.26 | 37.97 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 41.0 | 37.69 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 41.42 | 37.22 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 40.17 | 35.29 |
| EES13101 | Sorghum | cytosol | 35.98 | 34.82 |
| Zm00001d013947_P001 | Maize | cytosol | 37.66 | 33.96 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 38.49 | 33.33 |
| Os04t0677300-01 | Rice | plastid | 35.56 | 33.33 |
| Zm00001d032620_P001 | Maize | cytosol | 38.08 | 33.21 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 31.38 | 33.19 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 27.2 | 33.16 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.54 | 33.03 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 30.96 | 32.74 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.54 | 32.44 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 33.47 | 31.62 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 33.05 | 31.35 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 30.54 | 31.2 |
| Zm00001d001832_P001 | Maize | plastid | 32.64 | 31.08 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.13 | 31.03 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.29 | 30.97 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 32.64 | 30.83 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 32.64 | 30.71 |
| OQU90204 | Sorghum | mitochondrion, plastid | 26.36 | 28.9 |
| Os02t0507900-00 | Rice | cytosol | 29.29 | 28.0 |
| EES06862 | Sorghum | peroxisome | 27.2 | 27.54 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 28.45 | 26.15 |
| AT5G21130.1 | Thale cress | cytosol | 25.94 | 22.06 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 13.81 | 21.15 |
| OQU88420 | Sorghum | mitochondrion | 26.36 | 18.05 |
Protein Annotations
| MapMan:35.1 | EntrezGene:841896 | UniProt:A0A178W0W8 | ProteinID:AAD25632.1 | ProteinID:AAT69205.1 | ProteinID:AEE33116.1 |
| ArrayExpress:AT1G54540 | EnsemblPlantsGene:AT1G54540 | RefSeq:AT1G54540 | TAIR:AT1G54540 | RefSeq:AT1G54540-TAIR-G | EnsemblPlants:AT1G54540.1 |
| TAIR:AT1G54540.1 | EMBL:AY600530 | Unigene:At.50731 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:LEA_2 | RefSeq:NP_175856.1 | ProteinID:OAP12150.1 | PFAM:PF03168 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009046 | PO:PO:0020100 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | UniProt:Q9SLI0 |
| TMHMM:TMhelix | UniParc:UPI000009F231 | SEG:seg | : | : | : |
Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
Coordinates
chr1:-:20367553..20368511
Molecular Weight (calculated)
26384.8 Da
IEP (calculated)
10.406
GRAVY (calculated)
0.014
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.