Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 64.17 | 63.64 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 59.17 | 57.72 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 64.58 | 56.99 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 56.67 | 55.74 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 55.42 | 54.06 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 52.92 | 49.8 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 53.75 | 49.62 |
| KRH34277 | Soybean | plasma membrane | 50.0 | 47.62 |
| KRG92519 | Soybean | cytosol | 49.17 | 47.2 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 48.75 | 46.61 |
| PGSC0003DMT400039340 | Potato | plastid | 49.58 | 46.12 |
| Solyc03g019920.1.1 | Tomato | plastid | 46.25 | 44.94 |
| EES13101 | Sorghum | cytosol | 45.83 | 44.53 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 47.92 | 44.4 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 45.83 | 44.35 |
| Solyc02g036480.1.1 | Tomato | nucleus | 47.08 | 44.14 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 46.25 | 44.05 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 52.5 | 43.75 |
| Os04t0677300-01 | Rice | plastid | 46.25 | 43.53 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 47.08 | 43.46 |
| CDY72163 | Canola | plastid | 44.58 | 43.15 |
| Zm00001d001832_P001 | Maize | plastid | 45.0 | 43.03 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 45.0 | 42.86 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 45.42 | 42.75 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 45.42 | 42.75 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 45.42 | 42.75 |
| CDY16419 | Canola | plastid | 43.75 | 42.34 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 43.75 | 42.34 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 44.58 | 42.29 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 47.08 | 42.01 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 43.75 | 41.5 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 40.83 | 41.0 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 43.33 | 40.94 |
| CDY26995 | Canola | cytosol | 47.92 | 37.46 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 47.5 | 34.97 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 37.08 | 33.21 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 35.0 | 31.82 |
| CDY38564 | Canola | plasma membrane | 47.5 | 17.98 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P20600_001 | EnsemblPlants:GSMUA_Achr9T20600_001 | EnsemblPlantsGene:GSMUA_Achr9G20600_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000296490C | UniProt:M0U219 | MapMan:35.1 | : | : | : |
Description
Putative harpin-induced protein 1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G20600_001]
Coordinates
chr9:+:24697040..24697762
Molecular Weight (calculated)
26147.9 Da
IEP (calculated)
10.324
GRAVY (calculated)
0.065
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQHRVHPV DVESPPPSAP EAPPSLLQPE KAGATAPAAH SRPPGKRRSR CCTCLCWSLL AIVILIVVIA VAAGVLYLVF RPKIPKYSVD RLAVSSFTVD
101: DNATVAVTFN VTVTARNPNR RIGIYYQGGS DLSAWYTDER LCTGSFPAFY QGHRNTTVLH VLLTGEAKIG SELLTELQQQ QQTGTIPLAV RGVVPVRVKL
201: GKLKLWKVRF KVRCSLVVNS LSASGDVSIR SSSCKFKLKL
101: DNATVAVTFN VTVTARNPNR RIGIYYQGGS DLSAWYTDER LCTGSFPAFY QGHRNTTVLH VLLTGEAKIG SELLTELQQQ QQTGTIPLAV RGVVPVRVKL
201: GKLKLWKVRF KVRCSLVVNS LSASGDVSIR SSSCKFKLKL
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.