CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	98.04	98.04
CDX74604	Canola	cytosol, nucleus, plasma membrane	98.04	98.04
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	84.71	87.1
CDY26995	Canola	cytosol	86.27	71.66
CDY16419	Canola	plastid	68.24	70.16
CDY72163	Canola	plastid	68.24	70.16
VIT_04s0069g01010.t01	Wine grape	plasma membrane	56.08	56.97
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	54.51	54.51
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	55.29	54.23
PGSC0003DMT400055257	Potato	plasma membrane, plastid	54.12	53.28
Solyc02g036480.1.1	Tomato	nucleus	53.33	53.12
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	49.02	50.81
KRH30725	Soybean	cytosol, nucleus, plasma membrane	47.84	49.59
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	46.27	48.36
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	47.84	46.92
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	45.49	45.85
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	42.75	45.42
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	46.67	44.74
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	45.49	44.62
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	46.27	44.36
GSMUA_Achr3P14210_001	Banana	plasma membrane	41.96	44.21
GSMUA_Achr1P17720_001	Banana	plasma membrane	43.14	40.44
KXG38271	Sorghum	cytosol, nucleus, vacuole	42.75	39.49
Zm00001d032620_P001	Maize	cytosol	41.57	38.69
EES13101	Sorghum	cytosol	37.25	38.46
Zm00001d013947_P001	Maize	cytosol	39.22	37.74
HORVU2Hr1G119500.1	Barley	peroxisome	36.86	37.3
TraesCS2D01G561400.1	Wheat	peroxisome	36.86	37.15
TraesCS2A01G593300.1	Wheat	peroxisome	36.86	37.15
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	47.45	37.12
OQU85155	Sorghum	extracellular, plasma membrane	28.24	36.73
Zm00001d001832_P001	Maize	plastid	36.08	36.65
TraesCS2B01G591000.1	Wheat	peroxisome	36.47	36.61
Os04t0677300-01	Rice	plastid	36.47	36.47
CDY38564	Canola	plasma membrane	87.06	35.02
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	29.41	33.19
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	28.63	33.03
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.02	32.89
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.8	32.76
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.02	32.74
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.02	32.74
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	29.8	32.48
OQU90204	Sorghum	mitochondrion, plastid	27.06	31.65
EES06862	Sorghum	peroxisome	28.24	30.51
CDY38543	Canola	cytosol, peroxisome, plasma membrane	29.8	29.69
CDY48196	Canola	cytosol, peroxisome, plasma membrane	30.2	29.62
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	30.2	29.62
Os02t0507900-00	Rice	cytosol	29.02	29.6
CDX83252	Canola	cytosol, peroxisome, plasma membrane	29.02	28.91
HORVU4Hr1G018720.1	Barley	cytosol	14.51	23.72
CDY09101	Canola	cytosol	25.1	21.84
OQU88420	Sorghum	mitochondrion	29.02	21.2
CDY09100	Canola	cytosol	25.1	21.12
CDX70963	Canola	cytosol	24.31	20.53
CDX88825	Canola	cytosol	24.31	20.53

Protein Annotations

EnsemblPlants:CDY53530	EnsemblPlantsGene:GSBRNA2T00010878001	GO:A0A078IR75	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF1	PFAM:PF03168	ProteinID:CDY53530	ProteinID:CDY53530.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBC96F	UniProt:A0A078IR75	MapMan:35.1	:

Description

BnaCnng25340DBnaCnng25340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR75]

Coordinates

chrLK033211:-:8700..10026

Molecular Weight (calculated)

28665.0 Da

IEP (calculated)

10.235

GRAVY (calculated)

-0.205

Length

255 amino acids

Sequence
(BLAST)

001: MSEHQKIHPV SDPEAPPPPT HPTVPLVSRG SSRSEHGDTT KESVTQPPQL DSPQRKKKGR RSCWCRCVCY TLLVLFLLIV VVGAAVGILY LVFRPKLPDY
101: NIDRLQLTRS ILNNQDSSLS TAFNVTITAK NPNEKIGIYY EDGSKISVLY MQTRLSNGSL PKFYQGHENT TIIFVEMTGY TQNATSLMAT LLEQQQLTGS
201: IPLRIRVTQP VRIKLGKLKL PEVKFFVRCG VFVDSLAANS VIRVRNSNCK FRFKL

Best Arabidopsis Sequence Match ( AT5G36970.1 )
(BLAST)

001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL

Arabidopsis Description

NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.