CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90204	Sorghum	mitochondrion, plastid	54.44	87.16
OQU85155	Sorghum	extracellular, plasma membrane	39.26	69.9
KXG38271	Sorghum	cytosol, nucleus, vacuole	46.99	59.42
Zm00001d013947_P001	Maize	cytosol	39.54	52.08
Zm00001d032620_P001	Maize	cytosol	40.11	51.09
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	36.68	48.12
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	35.53	47.69
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	34.38	47.43
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	35.82	46.99
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	27.51	39.02
EES06862	Sorghum	peroxisome	21.78	32.2
Bra039737.1-P	Field mustard	plasma membrane, plastid	22.35	31.45
CDY16419	Canola	plastid	22.06	31.05
AT1G65690.1	Thale cress	plasma membrane, plastid	22.06	30.56
KRH34277	Soybean	plasma membrane	22.06	30.56
KRG92519	Soybean	cytosol	21.49	30.0
PGSC0003DMT400039340	Potato	plastid	22.06	29.84
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	21.2	29.84
PGSC0003DMT400055257	Potato	plasma membrane, plastid	22.06	29.73
KRH30725	Soybean	cytosol, nucleus, plasma membrane	20.92	29.67
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	22.06	29.62
Solyc03g019920.1.1	Tomato	plastid	20.92	29.55
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	20.63	29.51
CDY72163	Canola	plastid	20.92	29.44
Solyc02g036480.1.1	Tomato	nucleus	21.49	29.3
VIT_04s0069g01010.t01	Wine grape	plasma membrane	20.92	29.08
CDY53530	Canola	cytosol, nucleus, plasma membrane	21.2	29.02
CDX74604	Canola	cytosol, nucleus, plasma membrane	21.2	29.02
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	20.92	28.63
EES13101	Sorghum	cytosol	20.06	28.34
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	20.63	28.24
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	20.34	27.31
Bra027969.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.63	26.77
AT1G54540.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	18.05	26.36
VIT_16s0039g00340.t01	Wine grape	cytosol	21.2	25.69
CDY26995	Canola	cytosol	21.49	24.43
EER98613	Sorghum	endoplasmic reticulum, plasma membrane, plastid	14.33	24.04
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	22.06	23.62
OQU87732	Sorghum	cytosol	18.34	21.69
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	17.19	19.67
EES09185	Sorghum	plastid	18.62	16.41
CDY38564	Canola	plasma membrane	21.78	11.99

Protein Annotations

EnsemblPlants:OQU88420	EnsemblPlantsGene:SORBI_3002G030725	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:LEA_2
PANTHER:PTHR34379	PANTHER:PTHR34379:SF4	PFAM:PF03168	ProteinID:OQU88420	ProteinID:OQU88420.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0009DC91E3	UniProt:A0A1W0W227	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr2:-:2808175..2811355

Molecular Weight (calculated)

36868.8 Da

IEP (calculated)

11.327

GRAVY (calculated)

-0.216

Length

349 amino acids

Sequence
(BLAST)

001: MQCHRRANLR GSFRLPSRDP DAVASSPARV NFHRRFPLSF RGKFLPGNNN KQGGNEKKPS AASSKKRGMD AADDVIYGVS KASSALLSSA SSLDSNTSSA
101: SSSSSAASRS STASSSPSVS GVLYPPAVKQ QASNNKRPAS SSPAAGAAAM VMCLLMVVFC GRVGATLLTS TALYLFPRRW RPATTTRKEK KGAVDSRRLV
201: LAVLAAAAVG ALYLALDPKA PRYSVDRLSV SAFQVDPSTV TARARFDVTV TVANPNSRIG IQYEPGSSLG VWYQSYRLER GALPAFYQGH RNTTVLPPAL
301: AGEVQLATAV VSGLQDAQRT GAAPLVFRAD VPVRVEVGSF KGREKSSQS

Best Arabidopsis Sequence Match ( AT5G36970.1 )
(BLAST)

001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL

Arabidopsis Description

NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.