Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 96.24 | 96.24 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 92.86 | 95.0 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 89.85 | 94.47 |
| Zm00001d032620_P001 | Maize | cytosol | 75.94 | 73.72 |
| Zm00001d013947_P001 | Maize | cytosol | 72.93 | 73.21 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 75.56 | 72.83 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 48.87 | 66.33 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 59.77 | 64.63 |
| OQU90204 | Sorghum | mitochondrion, plastid | 47.74 | 58.26 |
| KRH34277 | Soybean | plasma membrane | 49.62 | 52.38 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 47.37 | 51.64 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 47.37 | 51.22 |
| KRG92519 | Soybean | cytosol | 46.99 | 50.0 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 46.62 | 49.21 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 40.98 | 48.44 |
| PGSC0003DMT400039340 | Potato | plastid | 46.62 | 48.06 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 44.36 | 47.58 |
| CDY72163 | Canola | plastid | 44.36 | 47.58 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 44.74 | 47.41 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 40.23 | 47.35 |
| Solyc03g019920.1.1 | Tomato | plastid | 43.61 | 46.96 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 45.86 | 46.92 |
| CDY16419 | Canola | plastid | 43.61 | 46.77 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 44.74 | 46.67 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 43.23 | 46.37 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 44.36 | 46.27 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 50.0 | 46.18 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 44.74 | 45.95 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 43.61 | 45.49 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 44.36 | 45.38 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 43.23 | 45.1 |
| Solyc02g036480.1.1 | Tomato | nucleus | 43.23 | 44.92 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 42.11 | 41.64 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 37.22 | 41.42 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 37.97 | 39.92 |
| CDY26995 | Canola | cytosol | 44.36 | 38.44 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 45.11 | 36.81 |
| OQU88420 | Sorghum | mitochondrion | 46.99 | 35.82 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 35.34 | 34.31 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 26.32 | 33.49 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 31.95 | 29.82 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 33.08 | 28.66 |
| CDY38564 | Canola | plasma membrane | 44.74 | 18.77 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G173800.1 | EnsemblPlantsGene:TraesCS1D01G173800 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF1 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:247330085..247330885
Molecular Weight (calculated)
28819.1 Da
IEP (calculated)
10.984
GRAVY (calculated)
-0.037
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHQRQRIH PVDLEAGHPR PTTPLVPPGS SFRSDKGDPA AAADRRPPHR QPLPPPPRRV AAPLPLPPPK RRRGCCCRFL CCAVVTVLLL AVLAAAALGA
101: LYLVFQPKAP RYSVDRLSVS QFQVDPTLTA SARFDVTVTA ANPNGRIGIF YERGSSLSVW YHTHRLAQGA LPAFYQGRRN TTVLGVVMAG QAQLGSAVVA
201: ALRDEQQTGA VPLVFRADVP VRVELGSLKL WTVTSRVRCD LVVDSLLNAS SQIKIKGSNC KFSLKL
101: LYLVFQPKAP RYSVDRLSVS QFQVDPTLTA SARFDVTVTA ANPNGRIGIF YERGSSLSVW YHTHRLAQGA LPAFYQGRRN TTVLGVVMAG QAQLGSAVVA
201: ALRDEQQTGA VPLVFRADVP VRVELGSLKL WTVTSRVRCD LVVDSLLNAS SQIKIKGSNC KFSLKL
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.