CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	99.62	99.62
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	95.38	95.38
CDY38543	Canola	cytosol, peroxisome, plasma membrane	81.54	82.81
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	82.31	82.31
CDX83252	Canola	cytosol, peroxisome, plasma membrane	80.38	81.64
KRH14686	Soybean	plastid	60.0	57.14
PGSC0003DMT400005086	Potato	plastid	56.15	55.51
KRH73453	Soybean	plastid	58.08	55.31
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	55.77	54.31
PGSC0003DMT400022474	Potato	plastid	55.77	53.7
Solyc01g009160.2.1	Tomato	plastid	51.54	50.76
CDX88825	Canola	cytosol	48.46	41.72
CDX70963	Canola	cytosol	47.69	41.06
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	41.54	40.91
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	41.54	40.3
CDY09101	Canola	cytosol	45.0	39.93
CDY09100	Canola	cytosol	45.38	38.94
OQU87732	Sorghum	cytosol	42.31	37.29
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	38.46	36.23
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	38.08	36.0
TraesCS3A01G336800.1	Wheat	cytosol	40.38	35.84
TraesCS3D01G329800.1	Wheat	cytosol	41.15	34.85
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	35.38	34.72
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	36.54	34.67
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	36.15	34.56
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	36.15	34.56
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	35.38	34.46
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	37.69	34.39
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	37.31	34.15
Zm00001d005010_P001	Maize	plastid	37.31	34.15
Zm00001d043128_P001	Maize	cytosol	38.46	33.78
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	35.38	33.58
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	31.92	33.07
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	35.77	32.86
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	40.0	31.52
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	36.92	31.48
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	36.92	31.37
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	36.15	31.13
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	41.15	30.84
CDY16419	Canola	plastid	29.23	30.65
CDY72163	Canola	plastid	29.23	30.65
CDY53530	Canola	cytosol, nucleus, plasma membrane	29.62	30.2
CDX74604	Canola	cytosol, nucleus, plasma membrane	29.62	30.2
HORVU5Hr1G058740.3	Barley	cytosol, plastid	18.46	28.4
HORVU3Hr1G079540.2	Barley	plastid	42.31	27.92
EES09185	Sorghum	plastid	40.0	26.26
CDY26995	Canola	cytosol	28.85	24.43
HORVU6Hr1G013910.1	Barley	mitochondrion	32.31	22.4
Zm00001d028765_P001	Maize	plastid	26.15	21.79
CDY38564	Canola	plasma membrane	29.62	12.15

Protein Annotations

EnsemblPlants:CDY48196	EnsemblPlantsGene:GSBRNA2T00089013001	GO:A0A078IDY1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF0	PFAM:PF03168	ProteinID:CDY48196	ProteinID:CDY48196.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE0D0A	UniProt:A0A078IDY1	MapMan:35.1	:

Description

BnaA04g15600DBnaA04g15600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDY1]

Coordinates

chrLK032758:+:132309..133349

Molecular Weight (calculated)

28610.6 Da

IEP (calculated)

10.369

GRAVY (calculated)

-0.178

Length

260 amino acids

Sequence
(BLAST)

001: MAERVHPADS PPQSGQFSGN FSSGEFPRKP APPPATYVIQ VPKDQIYRVP PPENAHRLQL LSRKKPNRSR CRCCFCYFLA AIFTLAVLAA ISFAVLYAVF
101: RPEAPKYSVE GFSVSGINLT SPSPISPRFN VTVRSRNGNG KLGIYYEKGS SVDVFYGDVD LCNGALPVFY QPANNVTLVK TALTGSGIQL NSGARKEMRN
201: ELSKKTVPFK VRIKAPVKIK VGSVKTWTIT VKVNCDVTVD KLTAPSRIVS RKCSHDVDLW

Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)

001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW

Arabidopsis Description

NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.