Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G329800.1 | Wheat | cytosol | 73.35 | 94.14 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 69.29 | 93.17 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 77.16 | 92.12 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 48.98 | 76.89 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 30.46 | 71.01 |
| OQU87732 | Sorghum | cytosol | 52.28 | 69.83 |
| Zm00001d043128_P001 | Maize | cytosol | 51.02 | 67.91 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 57.87 | 65.71 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 57.11 | 60.0 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 31.22 | 45.9 |
| KRH73453 | Soybean | plastid | 29.44 | 42.49 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 32.99 | 42.48 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 27.92 | 42.31 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 32.23 | 42.05 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 28.17 | 42.05 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 27.66 | 41.92 |
| KRH14686 | Soybean | plastid | 28.93 | 41.76 |
| Zm00001d028765_P001 | Maize | plastid | 32.99 | 41.67 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 26.65 | 40.38 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 25.89 | 39.84 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 25.89 | 39.84 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 25.38 | 39.06 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 25.38 | 38.46 |
| PGSC0003DMT400022474 | Potato | plastid | 26.14 | 38.15 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 25.63 | 37.83 |
| PGSC0003DMT400005086 | Potato | plastid | 24.62 | 36.88 |
| Solyc01g009160.2.1 | Tomato | plastid | 24.62 | 36.74 |
| AT5G21130.1 | Thale cress | cytosol | 23.86 | 33.45 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 21.57 | 32.69 |
| CDY09100 | Canola | cytosol | 24.62 | 32.01 |
| Bra020147.1-P | Field mustard | cytosol | 24.37 | 31.68 |
| CDX88825 | Canola | cytosol | 24.11 | 31.46 |
| CDX70963 | Canola | cytosol | 24.11 | 31.46 |
| Bra006594.1-P | Field mustard | nucleus | 24.11 | 31.46 |
| CDY09101 | Canola | cytosol | 23.35 | 31.4 |
| Bra020148.1-P | Field mustard | cytosol | 22.84 | 30.72 |
| HORVU5Hr1G052650.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 15.99 | 28.64 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 16.24 | 27.35 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 17.26 | 26.98 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 8.12 | 20.51 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G079540.2 | EnsemblPlantsGene:HORVU3Hr1G079540 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 |
| PANTHER:PTHR31852 | PANTHER:PTHR31852:SF0 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B477AA8 |
| UniProt:A0A287LUN5 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:584054648..584056144
Molecular Weight (calculated)
42412.6 Da
IEP (calculated)
9.366
GRAVY (calculated)
-0.116
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: SQHVSSSFLR NKGETTPATT GSHTRCVAVI PISGPVRRGC GSWPDFVRTF DTFVDYCECG DRCMPYQFGM CQSTSTETDS VAPTMLMLQI DSHARREEQE
101: RPMMNDGRVH PAATSSDFSG EYAYSSSDPS SSPLYSFHFE KPIPPPPPQK PPPPQPGTYV VQVPKDKVFR VPPPENARLF QHYTRRAKRR AGCSCLRACL
201: YLAVALLSLA VLLAAAVGAV YLAFKPRQPA YSVVSLAVSG LAGVGNASAP GAISPGFAAT VRADNSANGK VGVHYESAGS RVAVSYEGVS LADGAWPAFY
301: QAPGNVTVFV ARAKGAGIRF SERERGQMAA AERLKSVPFD VDITVPVRLQ LGGVRTWALP VTVRCAMAVD RLAASAKVVS RSCDVKVPFL FWRN
101: RPMMNDGRVH PAATSSDFSG EYAYSSSDPS SSPLYSFHFE KPIPPPPPQK PPPPQPGTYV VQVPKDKVFR VPPPENARLF QHYTRRAKRR AGCSCLRACL
201: YLAVALLSLA VLLAAAVGAV YLAFKPRQPA YSVVSLAVSG LAGVGNASAP GAISPGFAAT VRADNSANGK VGVHYESAGS RVAVSYEGVS LADGAWPAFY
301: QAPGNVTVFV ARAKGAGIRF SERERGQMAA AERLKSVPFD VDITVPVRLQ LGGVRTWALP VTVRCAMAVD RLAASAKVVS RSCDVKVPFL FWRN
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.