Factsheet for Zm00001d028765_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043128_P001	Maize	cytosol	53.85	56.76
OQU87732	Sorghum	cytosol	45.51	48.14
HORVU5Hr1G058740.3	Barley	cytosol, plastid	25.0	46.15
TraesCS3A01G336800.1	Wheat	cytosol	41.99	44.71
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	35.9	44.62
TraesCS3D01G329800.1	Wheat	cytosol	40.38	41.04
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	40.71	38.48
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	40.06	36.02
Zm00001d005010_P001	Maize	plastid	32.05	35.21
HORVU3Hr1G079540.2	Barley	plastid	41.67	32.99
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	27.24	32.2
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	27.56	32.09
HORVU6Hr1G013910.1	Barley	mitochondrion	38.14	31.73
KRH73453	Soybean	plastid	25.32	28.94
KRH14686	Soybean	plastid	25.32	28.94
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	23.08	26.97
CDY48196	Canola	cytosol, peroxisome, plasma membrane	21.79	26.15
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	21.79	26.15
Zm00001d001832_P001	Maize	plastid	20.83	25.9
Solyc01g009160.2.1	Tomato	plastid	21.79	25.76
PGSC0003DMT400022474	Potato	plastid	22.12	25.56
CDX83252	Canola	cytosol, peroxisome, plasma membrane	20.83	25.39
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.83	25.39
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	21.15	25.38
Zm00001d013947_P001	Maize	cytosol	21.15	24.91
CDY38543	Canola	cytosol, peroxisome, plasma membrane	20.19	24.61
Zm00001d032620_P001	Maize	cytosol	21.47	24.45
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	20.19	24.23
Zm00001d005265_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	15.71	23.56
CDY09101	Canola	cytosol	22.12	23.55
Bra020148.1-P	Field mustard	cytosol	21.79	23.21
PGSC0003DMT400005086	Potato	plastid	19.55	23.19
Bra020147.1-P	Field mustard	cytosol	22.12	22.77
Bra006594.1-P	Field mustard	nucleus	21.47	22.19
CDY09100	Canola	cytosol	21.47	22.11
CDX88825	Canola	cytosol	21.15	21.85
CDX70963	Canola	cytosol	20.51	21.19
AT5G21130.1	Thale cress	cytosol	17.63	19.57

Protein Annotations

EnsemblPlants:Zm00001d028765_P001	EnsemblPlants:Zm00001d028765_T001	EnsemblPlantsGene:Zm00001d028765	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF0	PFAM:PF03168	ProteinID:ONL96988.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00084348C8	UniProt:A0A1D6JZH0	MapMan:35.1	:	:

Description

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Coordinates

chr1:+:45932813..45935826

Molecular Weight (calculated)

33477.3 Da

IEP (calculated)

10.242

GRAVY (calculated)

-0.150

Length

312 amino acids

Sequence
(BLAST)

001: MLIPAYSRCN TAPASQPRPP ARRDSRDPPA HRIPRRELPT RPPQSPPRTP HPPSTIPACH VRNSSPRPAK QFGAGAAVAL AAALVGILAC LVLGLKPPAY
101: AVQVLAIFSL GNASSSAALS PGFDATVRTD NRNDRLGVRY EGGRGRVSVS YGGALLADDA RPALYQAPRN VTVVVARARG SGVRLSRSVR EQLAAAERLR
201: LVSFDVDVDV PVRLQLGEVR TWAVPLRACC TVAVDRLAVD ARVVSSSCDV KPPSIVTDVD CTTCDSKRPG KNCLIKLEWV CDYYHIKRQI ESELIQSGGI
301: ASSKPFLDLS KP

Best Arabidopsis Sequence Match ( AT5G21130.1 )
(BLAST)

001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L

Arabidopsis Description

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.