Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 2
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 86.82 | 81.75 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 82.95 | 78.1 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 82.95 | 78.1 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 82.95 | 78.1 |
| CDY15996 | Canola | endoplasmic reticulum | 82.17 | 77.37 |
| Bra019762.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 80.62 | 75.91 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.62 | 75.91 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.62 | 75.91 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 74.42 | 70.07 |
| KRH28013 | Soybean | cytosol | 55.04 | 64.55 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 48.84 | 62.38 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 65.12 | 60.87 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 64.34 | 59.71 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 63.57 | 58.99 |
| Bra016774.1-P | Field mustard | plasma membrane | 79.07 | 58.96 |
| KRH77425 | Soybean | plasma membrane | 58.14 | 56.39 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 58.91 | 55.47 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 57.36 | 55.22 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 58.14 | 54.74 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 55.04 | 52.99 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 55.04 | 52.99 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 55.04 | 52.99 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 56.59 | 52.52 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 55.81 | 51.8 |
| EER87801 | Sorghum | endoplasmic reticulum | 52.71 | 50.37 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 31.78 | 49.4 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 46.51 | 44.44 |
| GSMUA_Achr10P... | Banana | plasma membrane | 52.71 | 43.04 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 36.43 | 32.19 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837788 | ProteinID:AAF79631.1 | ProteinID:AEE28868.1 | ArrayExpress:AT1G12340 | EnsemblPlantsGene:AT1G12340 |
| RefSeq:AT1G12340 | TAIR:AT1G12340 | RefSeq:AT1G12340-TAIR-G | EnsemblPlants:AT1G12340.1 | TAIR:AT1G12340.1 | Unigene:At.51586 |
| InterPro:Cornichon | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_563903.2 | PFAM:PF03311 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | UniProt:Q3EDD7 |
| SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000150578D | : | : | : |
Description
Probable protein cornichon homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDD7]
Coordinates
chr1:+:4197396..4198310
Molecular Weight (calculated)
15379.8 Da
IEP (calculated)
5.541
GRAVY (calculated)
0.363
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.