Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 96.35 | 96.35 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 96.35 | 96.35 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 96.35 | 96.35 |
| CDY15996 | Canola | endoplasmic reticulum | 95.62 | 95.62 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.43 | 93.43 |
| Bra019762.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 93.43 | 93.43 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.43 | 93.43 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 81.75 | 86.82 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 81.75 | 81.75 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 70.8 | 70.29 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 68.61 | 67.63 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 68.61 | 67.63 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 66.42 | 66.42 |
| KRH77425 | Soybean | plasma membrane | 64.23 | 66.17 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 64.96 | 64.96 |
| KRH28013 | Soybean | cytosol | 51.82 | 64.55 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 45.99 | 62.38 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 57.66 | 58.96 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 35.04 | 57.83 |
| Bra016774.1-P | Field mustard | plasma membrane | 72.99 | 57.8 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 57.66 | 56.83 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 55.47 | 56.72 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 56.93 | 56.12 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 54.74 | 55.97 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 54.74 | 55.97 |
| EER87801 | Sorghum | endoplasmic reticulum | 54.74 | 55.56 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 51.82 | 52.59 |
| GSMUA_Achr10P... | Banana | plasma membrane | 52.55 | 45.57 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 40.15 | 37.67 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837794 | UniProt:A0A178W5R8 | ProteinID:AAF79633.1 | ProteinID:AEE28874.1 | EMBL:AK227496 |
| ArrayExpress:AT1G12390 | EnsemblPlantsGene:AT1G12390 | RefSeq:AT1G12390 | TAIR:AT1G12390 | RefSeq:AT1G12390-TAIR-G | EnsemblPlants:AT1G12390.1 |
| TAIR:AT1G12390.1 | Unigene:At.70435 | EMBL:BT004573 | InterPro:Cornichon | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | RefSeq:NP_172701.2 | ProteinID:OAP13849.1 | PFAM:PF03311 | PO:PO:0000293 | PANTHER:PTHR12290 |
| PANTHER:PTHR12290:SF18 | UniProt:Q84W04 | SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000000C3BA | : |
Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
Coordinates
chr1:+:4220044..4221803
Molecular Weight (calculated)
16437.3 Da
IEP (calculated)
4.730
GRAVY (calculated)
0.687
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.