Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 8
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 61.94 | 82.18 |
| EER87801 | Sorghum | endoplasmic reticulum | 79.1 | 78.52 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 48.51 | 78.31 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 73.88 | 73.88 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 73.13 | 73.13 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 73.13 | 73.13 |
| GSMUA_Achr10P... | Banana | plasma membrane | 83.58 | 70.89 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 69.4 | 67.39 |
| VIT_15s0048g00890.t01 | Wine grape | endoplasmic reticulum, extracellular | 63.43 | 63.43 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 64.93 | 62.59 |
| PGSC0003DMT400033255 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 50.75 | 62.39 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 63.43 | 62.04 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 62.69 | 61.31 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 63.43 | 61.15 |
| Solyc05g051030.2.1 | Tomato | plasma membrane | 61.94 | 61.03 |
| PGSC0003DMT400018058 | Potato | endoplasmic reticulum | 60.45 | 60.45 |
| Bra039259.1-P | Field mustard | endoplasmic reticulum | 49.25 | 58.41 |
| PGSC0003DMT400033256 | Potato | endoplasmic reticulum, extracellular, vacuole | 58.21 | 58.21 |
| KRH77425 | Soybean | plasma membrane | 57.46 | 57.89 |
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 58.96 | 57.66 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 58.96 | 57.66 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 55.22 | 57.36 |
| KRH28013 | Soybean | cytosol | 47.01 | 57.27 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 58.21 | 56.93 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 58.96 | 56.83 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 58.96 | 56.83 |
| CDY32198 | Canola | plasma membrane | 47.76 | 56.64 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 57.46 | 56.2 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.46 | 56.2 |
| CDY45964 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 56.72 | 55.88 |
| CDY15996 | Canola | endoplasmic reticulum | 56.72 | 55.47 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.22 | 54.01 |
| Bra019762.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.22 | 54.01 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.22 | 54.01 |
| KRH00566 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 48.51 | 47.79 |
| KRH40600 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 47.76 | 47.06 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 44.03 | 43.7 |
| GSMUA_Achr6P36290_001 | Banana | golgi, plasma membrane, vacuole | 48.51 | 43.62 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 43.28 | 42.96 |
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 43.28 | 42.96 |
| Bra033120.1-P | Field mustard | endoplasmic reticulum, extracellular | 43.28 | 42.96 |
| Bra016774.1-P | Field mustard | plasma membrane | 51.49 | 39.88 |
| Bra027009.1-P | Field mustard | plasma membrane | 58.21 | 37.86 |
| GSMUA_Achr5P22320_001 | Banana | plasma membrane | 49.25 | 35.68 |
| CDY45478 | Canola | plasma membrane | 55.97 | 30.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P00470_001 | EnsemblPlants:GSMUA_Achr9T00470_001 | EnsemblPlantsGene:GSMUA_Achr9G00470_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 |
| PFAM:PF03311 | SEG:seg | SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000296DA39 | UniProt:M0TWA4 |
| MapMan:35.1 | : | : | : | : | : |
Description
Protein cornichon homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00470_001]
Coordinates
chr9:+:434986..440110
Molecular Weight (calculated)
16081.2 Da
IEP (calculated)
5.831
GRAVY (calculated)
0.746
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFVWLTAFF LVVVLIALVI YQLMCLADLE FDYINPYDSA SRINKVIYPE FALQGALCLL FLLSGNWLMF LLCVPNLYYN VRLYQRRQHL IDVTEIFNQL
101: NREKKRRLFK LVTLVILLFL TLFWMIWSIL EDDE
101: NREKKRRLFK LVTLVILLFL TLFWMIWSIL EDDE
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.