Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P25150_001 | Banana | cytosol | 56.25 | 56.84 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 51.56 | 52.38 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 40.1 | 50.0 |
| KRH23610 | Soybean | cytosol | 46.35 | 46.35 |
| KRH09696 | Soybean | cytosol | 44.79 | 43.88 |
| PGSC0003DMT400073434 | Potato | cytosol | 28.65 | 41.04 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 37.5 | 40.91 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 37.5 | 40.91 |
| Solyc03g117310.1.1 | Tomato | cytosol | 43.75 | 40.0 |
| Solyc03g117340.1.1 | Tomato | cytosol | 36.46 | 38.67 |
| PGSC0003DMT400084778 | Potato | nucleus | 37.5 | 38.5 |
| CDY39968 | Canola | cytosol | 35.42 | 38.42 |
| PGSC0003DMT400073435 | Potato | cytosol | 38.02 | 38.22 |
| CDX79380 | Canola | cytosol | 38.54 | 38.14 |
| PGSC0003DMT400036834 | Potato | nucleus | 41.67 | 38.1 |
| CDX67952 | Canola | cytosol | 36.98 | 37.97 |
| CDX87319 | Canola | cytosol | 34.9 | 37.85 |
| Solyc06g068310.1.1 | Tomato | cytosol | 38.02 | 37.82 |
| KRH47406 | Soybean | cytosol | 39.58 | 37.44 |
| Bra035174.1-P | Field mustard | cytosol | 34.38 | 37.29 |
| Bra003571.1-P | Field mustard | cytosol | 35.94 | 36.9 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 44.79 | 36.6 |
| AT1G80520.1 | Thale cress | nucleus | 35.94 | 35.94 |
| AT1G15760.1 | Thale cress | nucleus | 37.5 | 35.64 |
| KRH44503 | Soybean | cytosol | 38.02 | 33.64 |
| Bra026110.1-P | Field mustard | cytosol | 34.38 | 32.67 |
| CDY36586 | Canola | nucleus | 34.38 | 32.67 |
| CDY61373 | Canola | cytosol | 34.38 | 32.67 |
| EES11537 | Sorghum | cytosol | 28.65 | 29.57 |
| Solyc07g007350.1.1 | Tomato | cytosol | 38.54 | 29.02 |
| Os04t0644100-01 | Rice | cytosol | 28.12 | 28.72 |
| PGSC0003DMT400078859 | Potato | cytosol | 37.5 | 28.46 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 16.67 | 28.32 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 28.12 | 26.34 |
| Zm00001d002096_P001 | Maize | cytosol | 28.12 | 26.34 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 28.12 | 26.09 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 33.85 | 25.9 |
| Zm00001d036740_P001 | Maize | cytosol | 27.08 | 25.87 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 27.6 | 25.48 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 28.65 | 25.35 |
| EER90109 | Sorghum | nucleus | 29.17 | 25.23 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 26.04 | 25.13 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 27.08 | 25.12 |
| Zm00001d046580_P001 | Maize | cytosol | 27.08 | 24.64 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 27.6 | 24.31 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 26.56 | 24.29 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 27.6 | 23.14 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 27.6 | 23.04 |
| KRH20227 | Soybean | cytosol | 34.38 | 22.37 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 27.08 | 21.85 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 26.04 | 21.55 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 31.77 | 21.48 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 27.08 | 21.4 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 25.52 | 21.03 |
| AT2G12462.1 | Thale cress | cytosol | 27.08 | 20.88 |
| KRH03583 | Soybean | nucleus | 34.38 | 20.75 |
| CDX93107 | Canola | cytosol | 26.56 | 20.56 |
| CDY50403 | Canola | cytosol | 26.56 | 20.56 |
| Bra013153.1-P | Field mustard | cytosol | 26.04 | 20.16 |
| KRH37823 | Soybean | nucleus | 30.73 | 20.14 |
| OQU75953 | Sorghum | cytosol | 27.08 | 19.7 |
| Zm00001d045137_P001 | Maize | plastid | 16.67 | 18.71 |
| OQU80824 | Sorghum | plastid | 16.15 | 15.27 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 17.71 | 11.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P09970_001 | EnsemblPlants:GSMUA_Achr1T09970_001 | EnsemblPlantsGene:GSMUA_Achr1G09970_001 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF1 | SEG:seg | SUPFAM:SSF47769 | UniParc:UPI000295C76F | UniProt:M0RYK6 | MapMan:35.2 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G09970_001]
Coordinates
chr1:+:7603745..7604323
Molecular Weight (calculated)
21867.3 Da
IEP (calculated)
9.837
GRAVY (calculated)
-0.402
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWYSWLSNS SLEPYLVYEY GLLLTNNELE EEDIAYFDHS FLQSMGIAVA KHRLEILKLT NKDRRVPPLP VAKLVAALRQ SKNCLARYLR TLSRAKSPAI
101: LVVPTTPYGD RWGGAMLRRK TKLALLRQGR LMITDRGMSI ARVPSPSHSA SPMYRSHHDQ RNAAAAADDD GYWETAVGDM RWDAMFQNLK PT
101: LVVPTTPYGD RWGGAMLRRK TKLALLRQGR LMITDRGMSI ARVPSPSHSA SPMYRSHHDQ RNAAAAADDD GYWETAVGDM RWDAMFQNLK PT
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.