Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- peroxisome 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073435 | Potato | cytosol | 47.76 | 33.51 |
| PGSC0003DMT400036834 | Potato | nucleus | 52.24 | 33.33 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 37.31 | 32.47 |
| PGSC0003DMT400084778 | Potato | nucleus | 42.54 | 30.48 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 39.55 | 30.11 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 41.04 | 28.65 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 40.3 | 28.57 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 23.13 | 27.43 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 35.82 | 27.27 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 37.31 | 26.32 |
| PGSC0003DMT400078859 | Potato | cytosol | 43.28 | 22.92 |
| EES11537 | Sorghum | cytosol | 30.6 | 22.04 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 32.84 | 21.15 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 31.34 | 21.11 |
| Zm00001d002096_P001 | Maize | cytosol | 32.09 | 20.98 |
| Os04t0644100-01 | Rice | cytosol | 29.1 | 20.74 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 32.09 | 20.48 |
| Zm00001d036740_P001 | Maize | cytosol | 26.12 | 17.41 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 26.87 | 17.39 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 26.12 | 17.07 |
| EER90109 | Sorghum | nucleus | 27.61 | 16.67 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 26.87 | 16.59 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 25.37 | 16.43 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 28.36 | 15.97 |
| Zm00001d046580_P001 | Maize | cytosol | 24.63 | 15.64 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 24.63 | 15.14 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 24.63 | 14.41 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 24.63 | 14.35 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 23.88 | 13.79 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 24.63 | 13.58 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 23.13 | 13.3 |
| OQU80824 | Sorghum | plastid | 20.15 | 13.3 |
| OQU75953 | Sorghum | cytosol | 26.12 | 13.26 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 22.39 | 9.9 |
| Zm00001d045137_P001 | Maize | plastid | 9.7 | 7.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073434 | EnsemblPlantsGene:PGSC0003DMG400028526 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 | PFAM:PF07647 |
| PGSC:PGSC0003DMG400028526 | SUPFAM:SSF47769 | UniParc:UPI000294DEA2 | UniProt:M1CS00 | MapMan:35.2 | : |
Description
Jp18 [Source:PGSC_GENE;Acc:PGSC0003DMG400028526]
Coordinates
chr6:+:49908205..49908654
Molecular Weight (calculated)
15659.0 Da
IEP (calculated)
10.296
GRAVY (calculated)
-0.419
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWCSWLSKT SLEPSLVYEY ALTFTHNELV QDDIAYFDDE FLQSMGIFVA KHRQKILKHA KRDQKKSTTS SRNHMLWLIV AIKEANKLVA KRLKMWTCRP
101: DSISCNFAVA PLRNYSTRWK AAMLKKNTKL STAN
101: DSISCNFAVA PLRNYSTRWK AAMLKKNTKL STAN
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.