Factsheet for TraesCS2D01G520300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G026900.1
TraesCS2A01G197700.1
TraesCS2B01G040200.1
TraesCS2B01G225100.1
TraesCS2D01G029000.1
TraesCS2D01G205700.1
TraesCS4A01G272200.1
TraesCS4A01G415500.1
TraesCS4B01G041800.1
TraesCS4B01G316300.1
TraesCS4D01G039000.1
TraesCS4D01G312900.1
TraesCS7A01G190000.1
TraesCS7B01G095100.1
TraesCS7D01G191200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	TraesCS7A01G190000.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS7B01G095100.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS7D01G191200.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS4A01G272200.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS4B01G041800.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS4D01G039000.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS2A01G197700.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2B01G225100.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2D01G205700.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2A01G026900.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS2B01G040200.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS2D01G029000.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4A01G415500.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4B01G316300.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4D01G312900.1	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G547200.1	Wheat	cytosol	86.54	90.45
TraesCS2A01G518900.1	Wheat	cytosol	88.94	88.1
HORVU2Hr1G114860.1	Barley	mitochondrion	26.92	49.56
Os04t0644100-01	Rice	cytosol	44.71	49.47
EES11537	Sorghum	cytosol	42.79	47.85
Zm00001d002096_P001	Maize	cytosol	44.71	45.37
GSMUA_Achr8P14710_001	Banana	cytosol	28.37	33.52
GSMUA_Achr8P17040_001	Banana	cytosol	27.88	32.95
PGSC0003DMT400073434	Potato	cytosol	21.15	32.84
GSMUA_Achr9P26950_001	Banana	cytosol	22.6	30.52
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	31.73	30.41
TraesCS7D01G143100.1	Wheat	cytosol	32.69	29.31
GSMUA_Achr8P25150_001	Banana	cytosol	26.44	28.95
GSMUA_Achr1P09970_001	Banana	cytosol	25.48	27.6
KRH09696	Soybean	cytosol	25.96	27.55
KRH23610	Soybean	cytosol	24.52	26.56
CDY39968	Canola	cytosol	22.6	26.55
CDX87319	Canola	cytosol	22.6	26.55
Bra035174.1-P	Field mustard	cytosol	22.12	25.99
GSMUA_Achr4P09380_001	Banana	cytosol	23.56	25.93
CDX67952	Canola	cytosol	23.08	25.67
AT1G15760.1	Thale cress	nucleus	24.52	25.25
Bra003571.1-P	Field mustard	cytosol	22.6	25.13
Solyc06g068310.1.1	Tomato	cytosol	23.08	24.87
Solyc03g117340.1.1	Tomato	cytosol	21.63	24.86
Bra026110.1-P	Field mustard	cytosol	24.04	24.75
CDY36586	Canola	nucleus	24.04	24.75
PGSC0003DMT400073435	Potato	cytosol	22.6	24.61
PGSC0003DMT400084778	Potato	nucleus	22.12	24.6
CDY61373	Canola	cytosol	23.56	24.26
CDX79380	Canola	cytosol	22.6	24.23
AT1G80520.1	Thale cress	nucleus	22.12	23.96
KRH47406	Soybean	cytosol	23.08	23.65
Solyc03g117310.1.1	Tomato	cytosol	23.08	22.86
Solyc07g007350.1.1	Tomato	cytosol	27.88	22.75
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	25.48	22.55
PGSC0003DMT400036834	Potato	nucleus	22.6	22.38
PGSC0003DMT400078859	Potato	cytosol	26.92	22.13
KRH44503	Soybean	cytosol	21.63	20.74
VIT_11s0118g00550.t01	Wine grape	cytosol	24.52	20.32
Bra013153.1-P	Field mustard	cytosol	22.12	18.55
CDX93107	Canola	cytosol	22.12	18.55
CDY50403	Canola	cytosol	22.12	18.55
AT2G12462.1	Thale cress	cytosol	22.12	18.47
KRH12842	Soybean	cytosol, nucleus, plastid	22.6	16.55
KRH20227	Soybean	cytosol	23.08	16.27
KRH03583	Soybean	nucleus	24.04	15.72
KRH37823	Soybean	nucleus	22.12	15.7

Protein Annotations

EnsemblPlants:TraesCS2D01G520300.1	EnsemblPlantsGene:TraesCS2D01G520300	PANTHER:PTHR33915	PANTHER:PTHR33915:SF3	SEG:seg	TIGR:cd09487
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:609515156..609515782

Molecular Weight (calculated)

22143.2 Da

IEP (calculated)

9.719

GRAVY (calculated)

-0.356

Length

208 amino acids

Sequence
(BLAST)

001: MSAMSGAMEW HAWLSSARLE PALVHEYALV LARNELEAGD AAYFDHDFLR SMGIDVAKHR LEILKLARPG PGERGRRSTS SSAAPLSGLV AAVGRVARYV
101: RALVRLRGES ESSSTALVLV PSQQQQPDGH VDVGRSSFGR CKAPKRTRSM PKAPGTTCTR SSAARATRAA GGCRGAATVH AMRDAESGGG GGDETVQWEC
201: LFQDLNPN

Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)

001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT

Arabidopsis Description

At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.