Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67952 | Canola | cytosol | 75.0 | 77.01 |
| Bra003571.1-P | Field mustard | cytosol | 73.44 | 75.4 |
| CDX79380 | Canola | cytosol | 76.04 | 75.26 |
| CDY39968 | Canola | cytosol | 67.19 | 72.88 |
| CDX87319 | Canola | cytosol | 66.67 | 72.32 |
| Bra035174.1-P | Field mustard | cytosol | 66.15 | 71.75 |
| AT1G15760.1 | Thale cress | nucleus | 68.23 | 64.85 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 40.62 | 50.65 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 38.02 | 41.48 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 35.42 | 38.64 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 37.5 | 38.1 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 37.5 | 37.89 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 35.94 | 35.94 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 30.73 | 28.78 |
| Os04t0644100-01 | Rice | cytosol | 27.6 | 28.19 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 29.69 | 27.54 |
| EES11537 | Sorghum | cytosol | 26.56 | 27.42 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 29.17 | 27.05 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 30.21 | 26.73 |
| Zm00001d046580_P001 | Maize | cytosol | 28.65 | 26.07 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 29.17 | 25.69 |
| EER90109 | Sorghum | nucleus | 29.69 | 25.68 |
| Zm00001d036740_P001 | Maize | cytosol | 26.56 | 25.37 |
| Zm00001d002096_P001 | Maize | cytosol | 27.08 | 25.37 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 14.58 | 24.78 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 30.21 | 24.37 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 23.44 | 22.61 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 24.48 | 22.38 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 23.96 | 22.12 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 25.0 | 20.96 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 25.0 | 20.87 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 25.0 | 20.69 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 24.48 | 20.17 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 25.0 | 19.75 |
| OQU75953 | Sorghum | cytosol | 27.08 | 19.7 |
| AT2G12462.1 | Thale cress | cytosol | 25.52 | 19.68 |
| Zm00001d045137_P001 | Maize | plastid | 15.62 | 17.54 |
| OQU80824 | Sorghum | plastid | 16.67 | 15.76 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 18.75 | 11.88 |
Protein Annotations
| Gene3D:1.10.150.50 | MapMan:35.2 | EntrezGene:844391 | ProteinID:AAF27121.1 | ProteinID:AEE36415.1 | ArrayExpress:AT1G80520 |
| EnsemblPlantsGene:AT1G80520 | RefSeq:AT1G80520 | TAIR:AT1G80520 | RefSeq:AT1G80520-TAIR-G | EnsemblPlants:AT1G80520.1 | TAIR:AT1G80520.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR001660 |
| RefSeq:NP_178167.1 | PFAM:PF07647 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 | UniProt:Q9M8M0 | InterPro:SAM | InterPro:SAM/pointed_sf | SUPFAM:SSF47769 |
| UniParc:UPI00000A57B0 | : | : | : | : | : |
Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
Coordinates
chr1:+:30276116..30277278
Molecular Weight (calculated)
22236.4 Da
IEP (calculated)
10.102
GRAVY (calculated)
-0.667
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.