Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 26.07 | 32.51 |
| Os04t0644100-01 | Rice | cytosol | 18.81 | 30.32 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 22.44 | 29.18 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 22.11 | 28.88 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 21.78 | 28.7 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 20.79 | 27.51 |
| OQU75953 | Sorghum | cytosol | 21.45 | 24.62 |
| Zm00001d045137_P001 | Maize | plastid | 13.86 | 24.56 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 11.88 | 23.38 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 18.15 | 23.11 |
| PGSC0003DMT400073434 | Potato | cytosol | 9.9 | 22.39 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 12.54 | 21.59 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 12.54 | 21.59 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 12.87 | 20.63 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 12.54 | 20.0 |
| KRH09696 | Soybean | cytosol | 12.21 | 18.88 |
| PGSC0003DMT400073435 | Potato | cytosol | 11.88 | 18.85 |
| Solyc03g117340.1.1 | Tomato | cytosol | 11.22 | 18.78 |
| KRH23610 | Soybean | cytosol | 11.88 | 18.75 |
| AT1G80520.1 | Thale cress | nucleus | 11.88 | 18.75 |
| KRH47406 | Soybean | cytosol | 12.54 | 18.72 |
| Bra003571.1-P | Field mustard | cytosol | 11.55 | 18.72 |
| CDX67952 | Canola | cytosol | 11.55 | 18.72 |
| Solyc06g068310.1.1 | Tomato | cytosol | 11.88 | 18.65 |
| Bra035174.1-P | Field mustard | cytosol | 10.89 | 18.64 |
| CDY39968 | Canola | cytosol | 10.89 | 18.64 |
| CDX87319 | Canola | cytosol | 10.89 | 18.64 |
| Solyc03g117310.1.1 | Tomato | cytosol | 12.87 | 18.57 |
| CDX79380 | Canola | cytosol | 11.88 | 18.56 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 14.19 | 18.3 |
| PGSC0003DMT400036834 | Potato | nucleus | 12.54 | 18.1 |
| AT1G15760.1 | Thale cress | nucleus | 11.88 | 17.82 |
| Bra026110.1-P | Field mustard | cytosol | 11.88 | 17.82 |
| CDY36586 | Canola | nucleus | 11.88 | 17.82 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 11.22 | 17.71 |
| CDY61373 | Canola | cytosol | 11.55 | 17.33 |
| PGSC0003DMT400084778 | Potato | nucleus | 10.56 | 17.11 |
| KRH44503 | Soybean | cytosol | 11.55 | 16.13 |
| CDX93107 | Canola | cytosol | 12.54 | 15.32 |
| CDY50403 | Canola | cytosol | 12.54 | 15.32 |
| Bra013153.1-P | Field mustard | cytosol | 12.54 | 15.32 |
| AT2G12462.1 | Thale cress | cytosol | 12.54 | 15.26 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 12.54 | 15.14 |
| PGSC0003DMT400078859 | Potato | cytosol | 12.21 | 14.62 |
| Solyc07g007350.1.1 | Tomato | cytosol | 12.21 | 14.51 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 12.54 | 13.38 |
| KRH37823 | Soybean | nucleus | 12.54 | 12.97 |
| KRH20227 | Soybean | cytosol | 11.55 | 11.86 |
| KRH03583 | Soybean | nucleus | 11.22 | 10.69 |
Protein Annotations
| EnsemblPlants:Os06t0179100-00 | EnsemblPlantsGene:Os06g0179100 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | ProteinID:BAS96447.1 |
| SEG:seg | SUPFAM:SSF47769 | UniParc:UPI0003939013 | UniProt:A0A0P0WT39 | MapMan:35.2 | : |
Description
Similar to H0306F03.13 protein. (Os06t0179100-00)
Coordinates
chr6:+:3932020..3933032
Molecular Weight (calculated)
33680.2 Da
IEP (calculated)
11.376
GRAVY (calculated)
-0.694
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: LTKPSRRAPR ELAVAAGGGG REGGMDWYAW LCRAGLHPDV AFEYARLFAR NELAADDLRH LDHGLLATMG VPIAKHRLEI LKLARRESPP SSSSSSSLAA
101: GRRRRRAAPA AAAAAVEAAP RSRAAAAVRD AERRQEDGAA EAPQQAHAHQ PLQRRRRRRE EDEDDKRRGD DLQGRRPRRR VGGGGGDNRL LRRKPRRLQL
201: QRRRIRSIRR RRGHAMGVHV PRSQAHINRA SLAACVVSSI HGELQACNNG CSIDLCPEEE EEDKVRTCKS TSTVVTGSLS LLHYLLFVCS VFCNCTCVEI
301: ERR
101: GRRRRRAAPA AAAAAVEAAP RSRAAAAVRD AERRQEDGAA EAPQQAHAHQ PLQRRRRRRE EDEDDKRRGD DLQGRRPRRR VGGGGGDNRL LRRKPRRLQL
201: QRRRIRSIRR RRGHAMGVHV PRSQAHINRA SLAACVVSSI HGELQACNNG CSIDLCPEEE EEDKVRTCKS TSTVVTGSLS LLHYLLFVCS VFCNCTCVEI
301: ERR
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.