Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g117310.1.1 | Tomato | cytosol | 94.29 | 94.29 |
| PGSC0003DMT400073434 | Potato | cytosol | 33.33 | 52.24 |
| PGSC0003DMT400084778 | Potato | nucleus | 41.9 | 47.06 |
| PGSC0003DMT400073435 | Potato | cytosol | 41.9 | 46.07 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 31.43 | 42.86 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 38.1 | 41.67 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 34.76 | 38.62 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 31.9 | 38.07 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 33.33 | 36.84 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 29.05 | 34.66 |
| EES11537 | Sorghum | cytosol | 26.67 | 30.11 |
| Os04t0644100-01 | Rice | cytosol | 24.76 | 27.66 |
| PGSC0003DMT400078859 | Potato | cytosol | 32.86 | 27.27 |
| Zm00001d002096_P001 | Maize | cytosol | 24.76 | 25.37 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 22.86 | 24.12 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 23.33 | 23.67 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 24.29 | 23.5 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 22.86 | 23.41 |
| EER90109 | Sorghum | nucleus | 24.29 | 22.97 |
| Zm00001d046580_P001 | Maize | cytosol | 22.86 | 22.75 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 22.38 | 22.71 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 22.38 | 22.6 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 23.33 | 22.48 |
| Zm00001d036740_P001 | Maize | cytosol | 21.43 | 22.39 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 22.38 | 22.38 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 23.81 | 21.01 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 22.86 | 20.96 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 10.95 | 20.35 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 22.38 | 20.26 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 21.9 | 20.0 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 21.9 | 19.74 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 21.9 | 18.93 |
| OQU75953 | Sorghum | cytosol | 21.9 | 17.42 |
| Zm00001d045137_P001 | Maize | plastid | 13.33 | 16.37 |
| OQU80824 | Sorghum | plastid | 13.33 | 13.79 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 18.1 | 12.54 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036834 | EnsemblPlantsGene:PGSC0003DMG400014201 | EntrezGene:102578374 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 |
| PFAM:PF07647 | PGSC:PGSC0003DMG400014201 | RefSeq:XP_006341384.1 | SEG:seg | SUPFAM:SSF47769 | UniParc:UPI000294D626 |
| UniProt:M1B4B2 | MapMan:35.2 | : | : | : | : |
Description
Jp18 [Source:PGSC_GENE;Acc:PGSC0003DMG400014201]
Coordinates
chr3:-:57064954..57066123
Molecular Weight (calculated)
24192.7 Da
IEP (calculated)
9.445
GRAVY (calculated)
-0.547
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSKT SLDPSLLYDY AIIFAHNQLD QDDIEYFNHE FLQSIGISIA KHRLEILKLA TKEKGRRSSR KHIFWLVVAI RQAKQHFTKS FSTWTRRSDS
101: SALLPLRNCS SRWKASMLKR KKKLTAAKQE RPVMQSINAT TNQGRLMMLT NGSPNLMIDS SDAWISSPSS STAEDFRDDE DMDGVDGGNW PTVAIEEIKW
201: DAMFQDLKPT
101: SALLPLRNCS SRWKASMLKR KKKLTAAKQE RPVMQSINAT TNQGRLMMLT NGSPNLMIDS SDAWISSPSS STAEDFRDDE DMDGVDGGNW PTVAIEEIKW
201: DAMFQDLKPT
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.