Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G038330.2 | |
| HORVU2Hr1G046220.7 | |
| HORVU4Hr1G006740.1 | |
| HORVU4Hr1G080140.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G518900.1 | Wheat | cytosol | 51.33 | 27.62 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 49.56 | 26.92 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 41.59 | 23.62 |
| PGSC0003DMT400073434 | Potato | cytosol | 27.43 | 23.13 |
| EES11537 | Sorghum | cytosol | 32.74 | 19.89 |
| Os04t0644100-01 | Rice | cytosol | 31.86 | 19.15 |
| Zm00001d002096_P001 | Maize | cytosol | 34.51 | 19.02 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 28.32 | 16.67 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 27.43 | 16.32 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 22.12 | 16.23 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 24.78 | 15.91 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 24.78 | 15.91 |
| CDY39968 | Canola | cytosol | 24.78 | 15.82 |
| CDX87319 | Canola | cytosol | 24.78 | 15.82 |
| PGSC0003DMT400073435 | Potato | cytosol | 26.55 | 15.71 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 28.32 | 15.61 |
| Solyc06g068310.1.1 | Tomato | cytosol | 26.55 | 15.54 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 28.32 | 15.46 |
| AT1G15760.1 | Thale cress | nucleus | 27.43 | 15.35 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 25.66 | 15.34 |
| KRH09696 | Soybean | cytosol | 26.55 | 15.31 |
| Bra035174.1-P | Field mustard | cytosol | 23.89 | 15.25 |
| KRH23610 | Soybean | cytosol | 25.66 | 15.1 |
| PGSC0003DMT400084778 | Potato | nucleus | 24.78 | 14.97 |
| Solyc03g117340.1.1 | Tomato | cytosol | 23.89 | 14.92 |
| AT1G80520.1 | Thale cress | nucleus | 24.78 | 14.58 |
| CDX67952 | Canola | cytosol | 23.89 | 14.44 |
| CDX79380 | Canola | cytosol | 24.78 | 14.43 |
| KRH47406 | Soybean | cytosol | 25.66 | 14.29 |
| Bra003571.1-P | Field mustard | cytosol | 23.01 | 13.9 |
| CDY36586 | Canola | nucleus | 24.78 | 13.86 |
| CDY61373 | Canola | cytosol | 24.78 | 13.86 |
| Bra026110.1-P | Field mustard | cytosol | 24.78 | 13.86 |
| KRH44503 | Soybean | cytosol | 26.55 | 13.82 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 28.32 | 13.62 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 23.89 | 11.59 |
| Solyc03g117310.1.1 | Tomato | cytosol | 21.24 | 11.43 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 24.78 | 11.16 |
| PGSC0003DMT400078859 | Potato | cytosol | 24.78 | 11.07 |
| Solyc07g007350.1.1 | Tomato | cytosol | 24.78 | 10.98 |
| PGSC0003DMT400036834 | Potato | nucleus | 20.35 | 10.95 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 24.78 | 9.86 |
| KRH37823 | Soybean | nucleus | 24.78 | 9.56 |
| KRH20227 | Soybean | cytosol | 24.78 | 9.49 |
| KRH03583 | Soybean | nucleus | 26.55 | 9.43 |
| CDX93107 | Canola | cytosol | 19.47 | 8.87 |
| CDY50403 | Canola | cytosol | 19.47 | 8.87 |
| Bra013153.1-P | Field mustard | cytosol | 19.47 | 8.87 |
| AT2G12462.1 | Thale cress | cytosol | 19.47 | 8.84 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G114860.1 | EnsemblPlantsGene:HORVU2Hr1G114860 | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF3 | SEG:seg | UniParc:UPI000B474BB0 |
| UniProt:A0A287JIQ9 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:732923173..732924158
Molecular Weight (calculated)
11646.7 Da
IEP (calculated)
9.448
GRAVY (calculated)
-0.440
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: STYSYYNQAR VTGARDRRAV SYKPHSSPPS IAQSGNKAKT RSMGAMSGAM EWHAWLSAAR LEPALVHEYA LVLARNELEA GDAAYFDHDF LRSMGIDVAX
101: XXXXXXXPRR CMP
101: XXXXXXXPRR CMP
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.