Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027498.1-P | |
| Bra036917.1-P | |
| Bra038380.1-P | |
| Bra039706.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15760.1 | Bra038380.1-P | AT4G09580.1 | 21798944 |
| AT1G15760.1 | Bra036917.1-P | AT4G14950.1 | 21798944 |
| AT1G15760.1 | Bra039706.1-P | AT4G14950.1 | 21798944 |
| AT1G15760.1 | Bra027498.1-P | AT5G43460.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36586 | Canola | nucleus | 98.02 | 98.02 |
| AT1G15760.1 | Thale cress | nucleus | 77.23 | 77.23 |
| Bra003571.1-P | Field mustard | cytosol | 60.4 | 65.24 |
| Bra035174.1-P | Field mustard | cytosol | 53.47 | 61.02 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 37.13 | 48.7 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 36.14 | 41.48 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 34.65 | 39.77 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 34.65 | 36.84 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 33.17 | 35.45 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 32.67 | 34.38 |
| Os04t0644100-01 | Rice | cytosol | 27.23 | 29.26 |
| EES11537 | Sorghum | cytosol | 26.24 | 28.49 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 26.73 | 26.09 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 26.24 | 25.85 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 26.24 | 25.6 |
| Zm00001d036740_P001 | Maize | cytosol | 25.25 | 25.37 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 27.23 | 25.35 |
| Zm00001d046580_P001 | Maize | cytosol | 26.24 | 25.12 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 13.86 | 24.78 |
| EER90109 | Sorghum | nucleus | 27.23 | 24.77 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 26.24 | 24.31 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 24.75 | 24.04 |
| Zm00001d002096_P001 | Maize | cytosol | 24.26 | 23.9 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 24.75 | 23.81 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 23.27 | 23.62 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 26.73 | 22.69 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 25.74 | 21.4 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 23.76 | 20.96 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 23.76 | 20.87 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 22.77 | 19.83 |
| Bra013153.1-P | Field mustard | cytosol | 23.76 | 19.35 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 22.28 | 19.31 |
| OQU75953 | Sorghum | cytosol | 24.26 | 18.56 |
| Zm00001d045137_P001 | Maize | plastid | 14.36 | 16.96 |
| OQU80824 | Sorghum | plastid | 14.85 | 14.78 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 17.82 | 11.88 |
Protein Annotations
| EnsemblPlants:Bra026110.1 | EnsemblPlants:Bra026110.1-P | EnsemblPlantsGene:Bra026110 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 |
| PFAM:PF07647 | PFscan:PS50105 | SUPFAM:SSF47769 | UniParc:UPI000253F0B8 | UniProt:M4EBF1 | MapMan:35.2 |
Description
AT1G15760 (E=2e-088) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80520.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA06:+:6063891..6064499
Molecular Weight (calculated)
23465.2 Da
IEP (calculated)
9.846
GRAVY (calculated)
-0.503
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSRT NLEPCLIHEY SLSFSKNELE HEDIAYFNHE FLQSIGVSIA KHRLEILKLA RRERKRSPLL TSRSISRVVV AIKKTSRCVS DHVRAWIRCE
101: EESSRALVLV PKRSSGVGKW RGGFMKRSKR SVMPSSANGG GVHKQQEVLL LTNGTPCRID SFSSPMVFDY SFREEMVYKE NSQDTYLEEI KWDSMFQNLK
201: PT
101: EESSRALVLV PKRSSGVGKW RGGFMKRSKR SVMPSSANGG GVHKQQEVLL LTNGTPCRID SFSSPMVFDY SFREEMVYKE NSQDTYLEEI KWDSMFQNLK
201: PT
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.