Factsheet for Bra039706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	Bra030034.1-P	AT1G27300.1	21798944
AT4G14950.1	Bra032817.1-P	AT1G27300.1	21798944
AT4G14950.1	Bra027174.1-P	AT3G16310.1	21798944
AT4G14950.1	Bra003423.1-P	AT3G60600.1	21798944
AT4G14950.1	Bra007547.1-P	AT3G60600.1	21798944
AT4G14950.1	Bra014481.1-P	AT3G60600.1	21798944
AT4G14950.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G14950.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G14950.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22723	Canola	plasma membrane	99.15	99.15
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	92.9	78.61
Bra036917.1-P	Field mustard	plasma membrane	80.68	73.96
KRH27628	Soybean	cytosol, nucleus, plasma membrane	73.01	61.93
Bra032466.1-P	Field mustard	mitochondrion, plasma membrane, plastid, vacuole	73.01	61.48
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	28.41	59.52
KRH77865	Soybean	golgi, plastid, vacuole	71.02	58.82
VIT_05s0020g03160.t01	Wine grape	plasma membrane	72.16	57.86
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	69.03	57.31
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	68.18	56.6
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	26.99	55.23
TraesCS2D01G205700.1	Wheat	plasma membrane	60.51	50.24
TraesCS2B01G225100.1	Wheat	plasma membrane	59.94	49.76
TraesCS2A01G197700.1	Wheat	plasma membrane	59.94	49.65
EER99579	Sorghum	plasma membrane	58.52	48.82
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	57.39	48.79
Os07t0571500-00	Rice	plasma membrane	57.95	47.78
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	52.56	46.25
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	60.23	39.63

Protein Annotations

EnsemblPlants:Bra039706.1	EnsemblPlants:Bra039706.1-P	EnsemblPlantsGene:Bra039706	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	PFAM:PF09335	SEG:seg	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI0002545A07	UniProt:M4FF34	MapMan:35.1	:	:

Description

AT4G14950 (E=3e-179) | unknown protein

Coordinates

chrA08:+:6535688..6537218

Molecular Weight (calculated)

39005.2 Da

IEP (calculated)

7.969

GRAVY (calculated)

0.419

Length

352 amino acids

Sequence
(BLAST)

001: MLITTLLVAF GVLLVTVDGP HGKHVEELLE YVRYSLWWIA LGVASSIGLG SGLHTFVLYL GPHIALFTLK ATQCGRVDLK SAPYDTIQLK RVPSWLDKSC
101: SEFGPPLMVS AAGSRVPLTS ILPQVQLEAI LWGIGTALGE LPPYFISRAA SISGSTVDGM EELDASPSED SGVMARFLNR IKRWLLTHTQ HLNFFTVLVL
201: ASVPNPLFDL AGIMCGQFGI PFWEFFLATL VGKAIIKTHI QTIFIICVCN NQLLDWMENE LIWILSHVPG LAAALPGLTA KLHAMKEKYI DAPPPVPSHI
301: KVKRWDFSFA SIWNGIVWLM LLNFFVKIVT ATAQRHLKKK QEREIAALTH LD

Best Arabidopsis Sequence Match ( AT4G14950.3 )
(BLAST)

001: MLRSQATLRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL WWIALGVASS
101: IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT ALGELPPYFI
201: SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII KTHIQTIFII
301: CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH LKKKQEKEMA
401: TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.