Factsheet for VIT_05s0020g03160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT4G14950.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT4G14950.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT4G14950.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039706.1-P	Field mustard	plasma membrane	57.86	72.16
KRH27628	Soybean	cytosol, nucleus, plasma membrane	67.65	71.57
KRH77865	Soybean	golgi, plastid, vacuole	67.2	69.41
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	64.69	68.27
AT1G05360.1	Thale cress	plasma membrane	63.55	67.07
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	64.24	66.51
Bra032466.1-P	Field mustard	mitochondrion, plasma membrane, plastid, vacuole	63.1	66.27
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	63.1	65.33
Bra036917.1-P	Field mustard	plasma membrane	56.72	64.84
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	22.78	59.52
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	22.32	56.98
TraesCS2D01G205700.1	Wheat	plasma membrane	53.3	55.19
TraesCS2A01G197700.1	Wheat	plasma membrane	53.3	55.06
EER99579	Sorghum	plasma membrane	52.85	54.98
TraesCS2B01G225100.1	Wheat	plasma membrane	53.08	54.95
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	51.48	54.59
Os07t0571500-00	Rice	plasma membrane	52.62	54.1
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	47.38	52.0
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	53.99	44.3
CDX93269	Canola	mitochondrion	8.88	43.82

Protein Annotations

EntrezGene:100246016	wikigene:100246016	MapMan:35.1	ProteinID:CBI26228	ProteinID:CBI26228.3	ncoils:Coil
UniProt:D7T6V7	EMBL:FN595749	GO:GO:0000407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006887	GO:GO:0007029	GO:GO:0007030
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	EntrezGene:LOC100246016
wikigene:LOC100246016	PFAM:PF09335	PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	InterPro:SNARE_assoc	TIGR:TC55866
TIGR:TC67397	TMHMM:TMhelix	UniParc:UPI0001983203	ArrayExpress:VIT_05s0020g03160	EnsemblPlantsGene:VIT_05s0020g03160	EnsemblPlants:VIT_05s0020g03160.t01
unigene:Vvi.8956	RefSeq:XP_002281783	RefSeq:XP_002281783.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:4912457..4920395

Molecular Weight (calculated)

48703.5 Da

IEP (calculated)

7.361

GRAVY (calculated)

0.289

Length

439 amino acids

Sequence
(BLAST)

001: MGSRNEVASP SSASSSSGSL EMAISGLRER QQQEMENLTL KTEPFKVLKF FILVVVQHVK QSVAYLLAKG GWVMLLSVVA MALGFVLMAI DGPHEKHVQE
101: LHQYFLFGLW WIALGIASSI GLGSGLHTFV LYLGPHIALF TIKAMQCGRV DIKSAPYDTI RLKSGPSWLD KDCSEFGPPV FSSLHALRVP LSSILPQVQV
201: EAVLWGIGTA LGELPPYFIS KAASLSGSKS DAIEELDASS PEDDGVVSTH LKQIKRWFLS HSQHLNFFTI LVLASVPNPL FDLAGIMCGQ FGIPFWKFFL
301: ATFIGKAIIK THIQTVFIIS VCNNQLLDWI ENELIWVLSL IPGFASVLPN LISKLNAMRD KYLAPSPPVP SNMKVKKWDL SFASIWNTVV WLMLINFFFK
401: IVTATAQNFL KKQQEKELLA LKDELSESTV SNDQSVENY

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.