Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G225100.1 | Wheat | plasma membrane | 98.35 | 98.35 |
| TraesCS2A01G197700.1 | Wheat | plasma membrane | 96.7 | 96.47 |
| Os07t0571500-00 | Rice | plasma membrane | 80.42 | 79.86 |
| EER99579 | Sorghum | plasma membrane | 73.11 | 73.46 |
| HORVU2Hr1G038330.2 | Barley | cytosol, plasma membrane, plastid | 92.45 | 73.27 |
| Zm00001d021861_P001 | Maize | cytosol, peroxisome, plasma membrane | 70.75 | 72.46 |
| Zm00001d016727_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 27.36 | 69.05 |
| Zm00001d040150_P001 | Maize | endoplasmic reticulum, plasma membrane | 26.89 | 66.28 |
| Bra039706.1-P | Field mustard | plasma membrane | 50.24 | 60.51 |
| CDY22723 | Canola | plasma membrane | 50.24 | 60.51 |
| GSMUA_Achr3P29660_001 | Banana | plasma membrane | 58.96 | 58.55 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 52.36 | 57.81 |
| AT1G05360.1 | Thale cress | plasma membrane | 56.37 | 57.45 |
| KRH27628 | Soybean | cytosol, nucleus, plasma membrane | 55.66 | 56.87 |
| CDY10028 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 55.9 | 56.83 |
| CDY59789 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 55.9 | 56.7 |
| Bra032466.1-P | Field mustard | mitochondrion, plasma membrane, plastid, vacuole | 55.9 | 56.7 |
| AT4G14950.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 55.42 | 56.49 |
| KRH77865 | Soybean | golgi, plastid, vacuole | 56.13 | 56.0 |
| TraesCS3D01G312800.1 | Wheat | plasma membrane | 57.08 | 55.89 |
| CDY09041 | Canola | plasma membrane | 56.13 | 55.35 |
| CDY54866 | Canola | plasma membrane, plastid | 54.01 | 54.14 |
| Bra036917.1-P | Field mustard | plasma membrane | 48.35 | 53.39 |
| VIT_05s0020g03160.t01 | Wine grape | plasma membrane | 55.19 | 53.3 |
| Solyc09g075850.2.1 | Tomato | golgi, peroxisome, plasma membrane | 53.3 | 53.3 |
| PGSC0003DMT400081427 | Potato | golgi, peroxisome, plasma membrane | 52.59 | 52.59 |
| Solyc01g099140.2.1 | Tomato | peroxisome | 52.12 | 52.12 |
| PGSC0003DMT400063650 | Potato | cytosol, nucleus, peroxisome | 52.12 | 52.12 |
| GSMUA_Achr6P25070_001 | Banana | cytosol, peroxisome, plasma membrane | 47.88 | 50.75 |
| CDY50267 | Canola | plastid | 42.45 | 49.86 |
| CDX93269 | Canola | mitochondrion | 9.91 | 47.19 |
| GSMUA_Achr6P25060_001 | Banana | extracellular | 17.92 | 38.38 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G205700.1 | EnsemblPlantsGene:TraesCS2D01G205700 | InterPro:SNARE_assoc | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF48 | PFAM:PF09335 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:157380890..157385460
Molecular Weight (calculated)
47017.0 Da
IEP (calculated)
8.823
GRAVY (calculated)
0.317
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEHTAVGED QAMSDLRDKH RLDLESLTLT SQPFKTLALF VLAIGQSIRS TCSCVLKEGS RLKFLVPLLG ATCVLLLVTD GPHEKHMQEL LWYARFGLWW
101: VILGVASSIG LGSGLHTFVL YLGPHIALFT MKAVQCGRVD LKSAPYDTIL LKRRPSWLEK ECLEFGPPIY QETIPFSKIL HEVHLEAVLW GIGTALGELP
201: PYFISRAASM SGQKVEELAE LDASISKEGF LSSILRRAKR WLMSHSQYLN FPTILLLASV PNPLFDLAGI LCGQFNVPFW KFFLATLIGK AIIKVYMQTT
301: LVITLCNNQL LELVEERLVW VFSNSPGVSS ILPSLVTKLK TAKDKFLMAS VATSASSAAK GKKWNLSFSL IWNTVVWLMV VNFIVQIITS TAQSYLKKQQ
401: ELEISMKSSA TMSSASEPAA GISN
101: VILGVASSIG LGSGLHTFVL YLGPHIALFT MKAVQCGRVD LKSAPYDTIL LKRRPSWLEK ECLEFGPPIY QETIPFSKIL HEVHLEAVLW GIGTALGELP
201: PYFISRAASM SGQKVEELAE LDASISKEGF LSSILRRAKR WLMSHSQYLN FPTILLLASV PNPLFDLAGI LCGQFNVPFW KFFLATLIGK AIIKVYMQTT
301: LVITLCNNQL LELVEERLVW VFSNSPGVSS ILPSLVTKLK TAKDKFLMAS VATSASSAAK GKKWNLSFSL IWNTVVWLMV VNFIVQIITS TAQSYLKKQQ
401: ELEISMKSSA TMSSASEPAA GISN
001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
Arabidopsis Description
KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.