CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX84933
CDX88803
CDX89063
CDX92368
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	CDX84933	AT1G27300.1	21798944
AT4G14950.1	CDY03907	AT1G27300.1	21798944
AT4G14950.1	CDY15722	AT1G27300.1	21798944
AT4G14950.1	CDY27605	AT1G27300.1	21798944
AT4G14950.1	CDX97739	AT3G16310.1	21798944
AT4G14950.1	CDY30157	AT3G16310.1	21798944
AT4G14950.1	CDX67837	AT3G60600.1	21798944
AT4G14950.1	CDX71796	AT3G60600.1	21798944
AT4G14950.1	CDX89063	AT3G60600.1	21798944
AT4G14950.1	CDY41153	AT3G60600.1	21798944
AT4G14950.1	CDY48365	AT3G60600.1	21798944
AT4G14950.1	CDX70995	AT5G22290.1	21798944
AT4G14950.1	CDX88803	AT5G22290.1	21798944
AT4G14950.1	CDX92368	AT5G22290.1	21798944
AT4G14950.1	CDY09128	AT5G22290.1	21798944
AT4G14950.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039706.1-P	Field mustard	plasma membrane	99.15	99.15
CDY09041	Canola	plasma membrane	99.15	81.16
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	93.47	79.09
CDY54866	Canola	plasma membrane, plastid	92.61	77.07
CDY50267	Canola	plastid	69.03	67.31
CDY59789	Canola	mitochondrion, plasma membrane, plastid, vacuole	73.3	61.72
CDY10028	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.73	61.39
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	28.41	59.52
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	69.32	57.55
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	68.47	56.84
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	26.99	55.23
TraesCS2D01G205700.1	Wheat	plasma membrane	60.51	50.24
TraesCS2B01G225100.1	Wheat	plasma membrane	59.94	49.76
TraesCS2A01G197700.1	Wheat	plasma membrane	59.94	49.65
EER99579	Sorghum	plasma membrane	58.52	48.82
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	57.1	48.55
Os07t0571500-00	Rice	plasma membrane	57.95	47.78
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	52.56	46.25
CDX93269	Canola	mitochondrion	11.65	46.07
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	60.23	39.63

Protein Annotations

EnsemblPlants:CDY22723	EnsemblPlantsGene:GSBRNA2T00021021001	GO:A0A078GDK2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	PFAM:PF09335	ProteinID:CDY22723	ProteinID:CDY22723.1
SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0004EEEA0B	UniProt:A0A078GDK2	MapMan:35.1

Description

BnaA08g05530DBnaA08g05530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDK2]

Coordinates

chrLK032135:+:29806..32338

Molecular Weight (calculated)

38977.2 Da

IEP (calculated)

7.969

GRAVY (calculated)

0.421

Length

352 amino acids

Sequence
(BLAST)

001: MLITTLLVAF GVLLVTVDGP HGKHVEELLE YVRYSLWWIA LGVASSIGLG SGLHTFVLYL GPHIALFTLK ATQCGRVDLK SAPYDTIQLK RVPSWLDKSC
101: SEFGPPLMVS AAGSRVPLTS ILPQVQLEAI LWGIGTALGE LPPYFISRAA SISGSTVDGM EELDASPSED SGVMARFLNR IKRWLLTHTQ HLNFFTVLVL
201: ASVPNPLFDL AGIMCGQFGI PFWEFFLATL IGKAIIKTHI QTIFIICVCN NQLLDWMENE LIWILSHVPG LAAALPGLTA KLHAMKEKYI DAPPPVPSHI
301: KVKRWDFSFA SIWNGIVWLM LLNFFVKIVT ATAQRHLKKK QEKEVAALTH LD

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.