CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59789	Canola	mitochondrion, plasma membrane, plastid, vacuole	96.88	96.65
AT1G05360.1	Thale cress	plasma membrane	86.09	86.3
CDY22723	Canola	plasma membrane	61.39	72.73
CDY54866	Canola	plasma membrane, plastid	69.06	68.09
CDY09041	Canola	plasma membrane	69.06	66.98
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	66.19	65.09
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	65.23	64.15
CDY50267	Canola	plastid	54.92	63.43
TraesCS2D01G205700.1	Wheat	plasma membrane	56.83	55.9
EER99579	Sorghum	plasma membrane	56.35	55.69
TraesCS2B01G225100.1	Wheat	plasma membrane	56.59	55.66
TraesCS2A01G197700.1	Wheat	plasma membrane	56.59	55.53
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	22.3	55.36
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	22.54	54.65
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	54.2	54.59
Os07t0571500-00	Rice	plasma membrane	55.64	54.33
CDX93269	Canola	mitochondrion	11.51	53.93
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	49.88	52.0
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	56.12	43.74

Protein Annotations

EnsemblPlants:CDY10028	EnsemblPlantsGene:GSBRNA2T00031813001	GO:A0A078FDC8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	ProteinID:CDY10028	ProteinID:CDY10028.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE8C6B	UniProt:A0A078FDC8	MapMan:35.1	:	:	:

Description

BnaC08g44230DBnaC08g44230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDC8]

Coordinates

chrLK032000:-:526343..528825

Molecular Weight (calculated)

46232.9 Da

IEP (calculated)

9.756

GRAVY (calculated)

0.310

Length

417 amino acids

Sequence
(BLAST)

001: MGSGKRASSA NPAISGLREK HQQDLEKLTL TSQPFKTFRL FVAAVFLYLR RSASYLLANG GLFMLFTIVF AVVSALLVTL DGPHVKHLEE LSEYVRFGLW
101: WIFLGVASSI GLGSGLHTFV LYLGPHIALF TIKAMTCGRV DLKTAIYDTI QLKRSPSWLD KPCNEFGPPV FSSGVPLSSI LPQIQIEAVL WGLGTALGEL
201: PPYFISRAAS LSGGKMEELE TCGGDGSGFI GRRLNHLKGW LLSHSQYLNF FTILVLASVP NPLFDLAGIM CGQFEKPFWE FFLATLIGKA VIKTHIQTVF
301: IICVCNNQLL DWIENELIYI LSFVPGFATA LPALAAKLRL MKEKYLVASP PVTSDINVKK WDLSFASVWN GVVWLMLLNF FGQIVTATAQ RYLKKQQERE
401: LDALTKKKSS PVSKKSK

Best Arabidopsis Sequence Match ( AT1G05360.1 )
(BLAST)

001: MGYGNRASSK TPAISGLREK HQQDLEKLTL TSQPFKTLRL FVVAVFLYVR RWSSYLLANV GWLILFCSIF VAFAALLVTL DGPHVKHVEE LSEYTRFGLW
101: WIFLGVASSI GLGSGLHTFV LYLGPHIALF TIKVMQCGRV DLKSAIYDTI QLKRSPSWLD KPCHEFGSPV FSSGVPLSSI LPQVQIEAIL WGLGTALGEL
201: PPYFISRAAS LSGGKMKELE TCSGDDNGFI AKRVNQIKSW LLSHSQYLNF FTILILASVP NPLFDLAGIM CGQFEKPFWE FFLATLIGKA IIKTHIQTVF
301: IICVCNNQLL DWVENELIYI LSFVPGFASA LPELTAKLRL MKEKYLIASP PVSSDINVKK WDLSFASVWN GVVWLMLLNF FGQIVTSTAQ RYLKKQQEEE
401: LDALTNKSSL TSKKSK

Arabidopsis Description

KMS2Vacuole membrane protein KMS2 [Source:UniProtKB/Swiss-Prot;Acc:F4I8Q7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.