Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY22723 | Canola | plasma membrane | 77.07 | 92.61 |
AT4G14950.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 87.47 | 88.94 |
CDY09041 | Canola | plasma membrane | 87.47 | 86.05 |
CDY50267 | Canola | plastid | 71.87 | 84.21 |
CDY59789 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 68.79 | 69.62 |
CDY10028 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 68.09 | 69.06 |
Solyc09g075850.2.1 | Tomato | golgi, peroxisome, plasma membrane | 65.01 | 64.86 |
PGSC0003DMT400081427 | Potato | golgi, peroxisome, plasma membrane | 63.36 | 63.21 |
Zm00001d016727_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 22.46 | 56.55 |
Zm00001d040150_P001 | Maize | endoplasmic reticulum, plasma membrane | 21.99 | 54.07 |
TraesCS2D01G205700.1 | Wheat | plasma membrane | 54.14 | 54.01 |
Os07t0571500-00 | Rice | plasma membrane | 54.37 | 53.86 |
TraesCS2A01G197700.1 | Wheat | plasma membrane | 53.9 | 53.65 |
TraesCS2B01G225100.1 | Wheat | plasma membrane | 53.66 | 53.54 |
Zm00001d021861_P001 | Maize | cytosol, peroxisome, plasma membrane | 52.25 | 53.38 |
EER99579 | Sorghum | plasma membrane | 52.96 | 53.08 |
GSMUA_Achr6P25070_001 | Banana | cytosol, peroxisome, plasma membrane | 48.46 | 51.25 |
CDX93269 | Canola | mitochondrion | 9.22 | 43.82 |
HORVU2Hr1G038330.2 | Barley | cytosol, plasma membrane, plastid | 54.61 | 43.18 |
Protein Annotations
EnsemblPlants:CDY54866 | EnsemblPlantsGene:GSBRNA2T00014775001 | GO:A0A078IXE9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:SNARE_assoc | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF68 | PFAM:PF09335 | ProteinID:CDY54866 | ProteinID:CDY54866.1 |
SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE1992 | UniProt:A0A078IXE9 | MapMan:35.1 | : |
Description
BnaC01g22640DBnaC01g22640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXE9]
Coordinates
chrLK033357:+:38170..40760
Molecular Weight (calculated)
46965.5 Da
IEP (calculated)
7.697
GRAVY (calculated)
0.361
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAAVASSS SSDAAISGKF LFLSLREKHE KEVENLTLTS QPLSTLSLFV EATVLYFKRS VLYLLAHGRW FMLLTTFLVA FGVLLVTVDG PHGKHVEEVS
101: EYVRYSLWWI TLGVASSIGL GSGLHTFVLY LGPHIALFTL KATQCGRIDL KYAPYDTIQF KRVPSWLEKS CSEFGPPLMV SAAGSRVPLT SILPQVQLEA
201: ILWGIGTALG ELPPYFISRA ASLSGSTVDG MEELEASSSE DSGFMAANLN RVKRWLLTHS QHLNFFTVFV LASVPNPLFD LAGIMCGQFG IPFWEFFLAT
301: LIGKAIIKTH IQTIFIICVC NNQLLDWMEN EMIWILSHVP GLADVLPGLI AKLHAMKEKY IDVSPPVPSH IKVKKWDFSF ASIWNGIVWL MLLNFFVKIV
401: TATAQRHLKK KQEKEVAALT HSD
101: EYVRYSLWWI TLGVASSIGL GSGLHTFVLY LGPHIALFTL KATQCGRIDL KYAPYDTIQF KRVPSWLEKS CSEFGPPLMV SAAGSRVPLT SILPQVQLEA
201: ILWGIGTALG ELPPYFISRA ASLSGSTVDG MEELEASSSE DSGFMAANLN RVKRWLLTHS QHLNFFTVFV LASVPNPLFD LAGIMCGQFG IPFWEFFLAT
301: LIGKAIIKTH IQTIFIICVC NNQLLDWMEN EMIWILSHVP GLADVLPGLI AKLHAMKEKY IDVSPPVPSH IKVKKWDFSF ASIWNGIVWL MLLNFFVKIV
401: TATAQRHLKK KQEKEVAALT HSD
001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
Arabidopsis Description
KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.