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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22723 Canola plasma membrane 77.07 92.61
AT4G14950.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 87.47 88.94
CDY09041 Canola plasma membrane 87.47 86.05
CDY50267 Canola plastid 71.87 84.21
CDY59789 Canola mitochondrion, plasma membrane, plastid, vacuole 68.79 69.62
CDY10028 Canola endoplasmic reticulum, plasma membrane, vacuole 68.09 69.06
Solyc09g075850.2.1 Tomato golgi, peroxisome, plasma membrane 65.01 64.86
PGSC0003DMT400081427 Potato golgi, peroxisome, plasma membrane 63.36 63.21
Zm00001d016727_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 22.46 56.55
Zm00001d040150_P001 Maize endoplasmic reticulum, plasma membrane 21.99 54.07
TraesCS2D01G205700.1 Wheat plasma membrane 54.14 54.01
Os07t0571500-00 Rice plasma membrane 54.37 53.86
TraesCS2A01G197700.1 Wheat plasma membrane 53.9 53.65
TraesCS2B01G225100.1 Wheat plasma membrane 53.66 53.54
Zm00001d021861_P001 Maize cytosol, peroxisome, plasma membrane 52.25 53.38
EER99579 Sorghum plasma membrane 52.96 53.08
GSMUA_Achr6P25070_001 Banana cytosol, peroxisome, plasma membrane 48.46 51.25
CDX93269 Canola mitochondrion 9.22 43.82
HORVU2Hr1G038330.2 Barley cytosol, plasma membrane, plastid 54.61 43.18
Protein Annotations
EnsemblPlants:CDY54866EnsemblPlantsGene:GSBRNA2T00014775001GO:A0A078IXE9GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:SNARE_assocPANTHER:PTHR10281PANTHER:PTHR10281:SF68PFAM:PF09335ProteinID:CDY54866ProteinID:CDY54866.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EE1992UniProt:A0A078IXE9MapMan:35.1:
Description
BnaC01g22640DBnaC01g22640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXE9]
Coordinates
chrLK033357:+:38170..40760
Molecular Weight (calculated)
46965.5 Da
IEP (calculated)
7.697
GRAVY (calculated)
0.361
Length
423 amino acids
Sequence
(BLAST)
001: MGSAAVASSS SSDAAISGKF LFLSLREKHE KEVENLTLTS QPLSTLSLFV EATVLYFKRS VLYLLAHGRW FMLLTTFLVA FGVLLVTVDG PHGKHVEEVS
101: EYVRYSLWWI TLGVASSIGL GSGLHTFVLY LGPHIALFTL KATQCGRIDL KYAPYDTIQF KRVPSWLEKS CSEFGPPLMV SAAGSRVPLT SILPQVQLEA
201: ILWGIGTALG ELPPYFISRA ASLSGSTVDG MEELEASSSE DSGFMAANLN RVKRWLLTHS QHLNFFTVFV LASVPNPLFD LAGIMCGQFG IPFWEFFLAT
301: LIGKAIIKTH IQTIFIICVC NNQLLDWMEN EMIWILSHVP GLADVLPGLI AKLHAMKEKY IDVSPPVPSH IKVKKWDFSF ASIWNGIVWL MLLNFFVKIV
401: TATAQRHLKK KQEKEVAALT HSD
Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)
001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
Arabidopsis Description
KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.