CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX84933
CDX88803
CDX89063
CDX92368
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	CDX84933	AT1G27300.1	21798944
AT4G14950.1	CDY03907	AT1G27300.1	21798944
AT4G14950.1	CDY15722	AT1G27300.1	21798944
AT4G14950.1	CDY27605	AT1G27300.1	21798944
AT4G14950.1	CDX97739	AT3G16310.1	21798944
AT4G14950.1	CDY30157	AT3G16310.1	21798944
AT4G14950.1	CDX67837	AT3G60600.1	21798944
AT4G14950.1	CDX71796	AT3G60600.1	21798944
AT4G14950.1	CDX89063	AT3G60600.1	21798944
AT4G14950.1	CDY41153	AT3G60600.1	21798944
AT4G14950.1	CDY48365	AT3G60600.1	21798944
AT4G14950.1	CDX70995	AT5G22290.1	21798944
AT4G14950.1	CDX88803	AT5G22290.1	21798944
AT4G14950.1	CDX92368	AT5G22290.1	21798944
AT4G14950.1	CDY09128	AT5G22290.1	21798944
AT4G14950.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036917.1-P	Field mustard	plasma membrane	85.32	80.21
CDY54866	Canola	plasma membrane, plastid	84.21	71.87
CDY22723	Canola	plasma membrane	67.31	69.03
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	79.22	68.75
CDY09041	Canola	plasma membrane	79.5	66.74
CDY10028	Canola	endoplasmic reticulum, plasma membrane, vacuole	63.43	54.92
CDY59789	Canola	mitochondrion, plasma membrane, plastid, vacuole	63.16	54.55
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	59.28	50.47
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	58.17	49.53
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	22.99	49.4
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	21.88	45.93
Os07t0571500-00	Rice	plasma membrane	50.69	42.86
TraesCS2B01G225100.1	Wheat	plasma membrane	49.86	42.45
TraesCS2D01G205700.1	Wheat	plasma membrane	49.86	42.45
TraesCS2A01G197700.1	Wheat	plasma membrane	49.86	42.35
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	48.2	42.03
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	45.98	41.5
EER99579	Sorghum	plasma membrane	48.2	41.23
CDX93269	Canola	mitochondrion	9.42	38.2
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	49.03	33.08

Protein Annotations

EnsemblPlants:CDY50267	EnsemblPlantsGene:GSBRNA2T00096329001	GO:A0A078IK38	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	ProteinID:CDY50267	ProteinID:CDY50267.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDE9DF	UniProt:A0A078IK38	MapMan:35.1	:	:	:

Description

BnaAnng10310DBnaAnng10310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK38]

Coordinates

chrLK032895:+:12262..14145

Molecular Weight (calculated)

39837.8 Da

IEP (calculated)

6.507

GRAVY (calculated)

0.394

Length

361 amino acids

Sequence
(BLAST)

001: MGSAAVTSSS SSSDAAISGK FLFLSLREKE VENLTLTSQP LNTLSLFGEA TFLYIKRSVL YLLAHGGWFI LLTTLLVAFG VLLVTVDGPH GKHVEEVSEY
101: VRYSLWWIAL GVASSIGLGS GLHTFVLYLG PHIALFTLKA TQCGRIDLKS APYDTIQFKR VPSWLEKSCS EFGPPLMISA AGSRVPLTSI LPQIQLEAIL
201: WGYWDSSWGA SSIFHLKGSL SGSRVDGMEE LEASPSEDMQ VPNPLFDLAG IMCGQFGIPF WEFFLATLIG KAIIKTHIQT IFIICVCNNQ LLDWMENEMI
301: WILSHVPGLA DALPGLIAKL HAMKEKYIDV SPPVPSHIKV KKWDFSFASI WKGIVWLMLL N

Best Arabidopsis Sequence Match ( AT4G14950.2 )
(BLAST)

001: MLRSQATLRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL WWIALGVASS
101: IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT ALGELPPYFI
201: SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII KTHIQTIFII
301: CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIK

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.