Factsheet for Bra036917.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	Bra030034.1-P	AT1G27300.1	21798944
AT4G14950.1	Bra032817.1-P	AT1G27300.1	21798944
AT4G14950.1	Bra027174.1-P	AT3G16310.1	21798944
AT4G14950.1	Bra003423.1-P	AT3G60600.1	21798944
AT4G14950.1	Bra007547.1-P	AT3G60600.1	21798944
AT4G14950.1	Bra014481.1-P	AT3G60600.1	21798944
AT4G14950.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G14950.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G14950.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50267	Canola	plastid	80.21	85.32
Bra039706.1-P	Field mustard	plasma membrane	73.96	80.68
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	85.42	78.85
Bra032466.1-P	Field mustard	mitochondrion, plasma membrane, plastid, vacuole	68.23	62.68
KRH27628	Soybean	cytosol, nucleus, plasma membrane	65.89	60.96
KRH77865	Soybean	golgi, plastid, vacuole	64.84	58.59
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	64.06	58.02
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	62.76	56.84
VIT_05s0020g03160.t01	Wine grape	plasma membrane	64.84	56.72
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	24.48	55.95
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	23.7	52.91
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	52.6	48.79
Os07t0571500-00	Rice	plasma membrane	53.91	48.48
TraesCS2D01G205700.1	Wheat	plasma membrane	53.39	48.35
TraesCS2B01G225100.1	Wheat	plasma membrane	53.12	48.11
EER99579	Sorghum	plasma membrane	52.6	47.87
TraesCS2A01G197700.1	Wheat	plasma membrane	52.86	47.76
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	47.66	45.75
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	53.65	38.5

Protein Annotations

EnsemblPlants:Bra036917.1	EnsemblPlants:Bra036917.1-P	EnsemblPlantsGene:Bra036917	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002544E40	UniProt:M4F757
MapMan:35.1	:	:	:	:	:

Description

AT4G14950 (E=2e-102) | unknown protein

Coordinates

chrA01:-:12097652..12099516

Molecular Weight (calculated)

42715.7 Da

IEP (calculated)

7.961

GRAVY (calculated)

0.454

Length

384 amino acids

Sequence
(BLAST)

001: MGPAAVTSSS DAAISGKFLF LSLREKHEKE VENLTLTSQP LNTLSLFGEA TFLYIKRSVL YLLAHGGWFI LLTTLLVAFG VLLVTVDGPH GKHVEEVSEY
101: VRYSLWWIAL GVASSIGLGS GLHTFVLYLG PHIALFTLKA TQCGRIDLKS APYDTIQFKR VPSWLEKSCS EFGPPLMVSA AGSRVPLTSI LPQIQLEAIL
201: WGIGTALGEL PPYFISRAVF LGAEWMEWFL VLASVPNPLF DLAGIMCGQF GIPFWEFFLA TLIGKAIIKT HIQTIFIICV CNNQLLDWME NEMIWILSHV
301: PGLADALPGL IAKLHAMKEK YIDVSPPVPS HIKVKKWYFS FASIWNGIVW LMLLNFFVKI VTATAQRHLK KKQEKEVAAL THSD

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.