Factsheet for Bra007547.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001840.1-P
Bra002268.1-P
Bra002403.1-P
Bra003423.1-P
Bra003737.1-P
Bra004430.1-P
Bra005215.1-P
Bra005216.1-P
Bra005930.1-P
Bra006523.1-P
Bra006619.1-P
Bra007547.1-P
Bra008874.1-P
Bra009279.1-P
Bra009280.1-P
Bra009746.1-P
Bra010670.1-P
Bra011585.1-P
Bra012289.1-P
Bra013226.1-P
Bra014118.1-P
Bra014481.1-P
Bra014848.1-P
Bra015613.1-P
Bra015804.1-P
Bra016411.1-P
Bra016620.1-P
Bra016774.1-P
Bra017697.1-P
Bra017936.1-P
Bra018237.1-P
Bra019762.1-P
Bra020182.1-P
Bra021442.1-P
Bra021906.1-P
Bra022748.1-P
Bra022985.1-P
Bra023102.1-P
Bra023103.1-P
Bra023866.1-P
Bra023867.1-P
Bra024856.1-P
Bra026434.1-P
Bra026634.1-P
Bra026690.1-P
Bra026997.1-P
Bra027009.1-P
Bra027622.1-P
Bra030565.1-P
Bra030605.1-P
Bra031296.1-P
Bra031297.1-P
Bra033558.1-P
Bra033633.1-P
Bra034675.1-P
Bra034700.1-P
Bra039259.1-P
Bra039375.1-P
Bra040984.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60600.1	Bra030565.1-P	AT1G04340.1	21798944
AT3G60600.1	Bra016774.1-P	AT1G12390.1	21798944
AT3G60600.1	Bra019762.1-P	AT1G12390.1	21798944
AT3G60600.1	Bra016620.1-P	AT1G17080.1	21798944
AT3G60600.1	Bra026690.1-P	AT1G17080.1	21798944
AT3G60600.1	Bra040984.1-P	AT1G17080.1	21798944
AT3G60600.1	Bra015613.1-P	AT1G47530.1	21798944
AT3G60600.1	Bra014118.1-P	AT1G48240.1	21798944
AT3G60600.1	Bra027009.1-P	AT1G62880.1	21798944
AT3G60600.1	Bra039259.1-P	AT1G62880.1	21798944
AT3G60600.1	Bra026997.1-P	AT1G63120.1	21798944
AT3G60600.1	Bra027622.1-P	AT1G63120.1	21798944
AT3G60600.1	Bra003737.1-P	AT1G75880.1	21798944
AT3G60600.1	Bra015804.1-P	AT1G75880.1	21798944
AT3G60600.1	Bra012289.1-P	AT1G77350.1	21798944
AT3G60600.1	Bra016411.1-P	AT1G77350.1	21798944
AT3G60600.1	Bra017936.1-P	AT1G77350.1	21798944
AT3G60600.1	Bra024856.1-P	AT2G01770.1	21798944
AT3G60600.1	Bra026634.1-P	AT2G01770.1	21798944
AT3G60600.1	Bra018237.1-P	AT2G31490.1	21798944
AT3G60600.1	Bra030605.1-P	AT2G32380.1	21798944
AT3G60600.1	Bra021906.1-P	AT2G34380.1	21798944
AT3G60600.1	Bra022985.1-P	AT2G34690.1	18845362
AT3G60600.1	Bra005215.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra005216.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra023102.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra023103.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra004430.1-P	AT2G47770.1	21798944
AT3G60600.1	Bra021442.1-P	AT2G47770.1	21798944
AT3G60600.1	Bra034700.1-P	AT3G13175.1	21798944
AT3G60600.1	Bra039375.1-P	AT3G13175.1	21798944
AT3G60600.1	Bra001840.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra023866.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra023867.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra031296.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra031297.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra013226.1-P	AT3G25190.1	21798944
AT3G60600.1	Bra014848.1-P	AT3G54020.1	21798944
AT3G60600.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G60600.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G60600.1	Bra014481.1-P	AT3G60600.1	21798944
AT3G60600.1	Bra026434.1-P	AT4G26455.1	21798944
AT3G60600.1	Bra011585.1-P	AT4G35100.1	21798944
AT3G60600.1	Bra017697.1-P	AT4G35100.1	21798944
AT3G60600.1	Bra034675.1-P	AT4G35100.1	21798944
AT3G60600.1	Bra033558.1-P	AT4G38250.1	21798944
AT3G60600.1	Bra010670.1-P	AT4G39670.1	18845362
AT3G60600.1	Bra033633.1-P	AT4G39670.1	18845362
AT3G60600.1	Bra005930.1-P	AT5G07250.1	21798944
AT3G60600.1	Bra009279.1-P	AT5G07250.1	21798944
AT3G60600.1	Bra009280.1-P	AT5G07250.1	21798944
AT3G60600.1	Bra008874.1-P	AT5G12880.1	21798944
AT3G60600.1	Bra002268.1-P	AT5G19875.1	21798944
AT3G60600.1	Bra006523.1-P	AT5G19875.1	21798944
AT3G60600.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G60600.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G60600.1	Bra020182.1-P	AT5G22290.1	21798944
AT3G60600.1	Bra009746.1-P	AT5G24290.1	21798944
AT3G60600.1	Bra022748.1-P	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71796	Canola	cytosol	98.74	98.74
CDY41153	Canola	cytosol	97.9	97.9
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	96.22	95.82
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	92.86	92.08
AT3G60600.1	Thale cress	cytosol	88.24	82.03
Bra003313.1-P	Field mustard	cytosol	76.05	81.17
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	80.67	80.33
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	71.85	71.55
Solyc01g090910.2.1	Tomato	nucleus	68.49	69.96
KRH65384	Soybean	cytosol	69.33	68.46
KRH76164	Soybean	endoplasmic reticulum	69.33	68.46
Solyc10g018350.1.1	Tomato	cytosol	64.29	64.29
Zm00001d049553_P001	Maize	plasma membrane	61.76	60.25
EES14570	Sorghum	cytosol, nucleus, plasma membrane	60.92	59.43
TraesCS7A01G300700.1	Wheat	cytosol	60.5	59.26
TraesCS7D01G296400.1	Wheat	cytosol	60.5	59.26
GSMUA_Achr5P20880_001	Banana	cytosol	58.4	58.16
Os08t0156700-01	Rice	plasma membrane	59.24	58.02
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	57.98	57.74
GSMUA_Achr1P20280_001	Banana	cytosol	51.68	57.48
Bra035442.1-P	Field mustard	cytosol	26.05	57.41
PGSC0003DMT400066920	Potato	cytosol	64.29	57.3
Bra000978.1-P	Field mustard	cytosol	56.3	56.78
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	52.94	55.51
Solyc06g034220.2.1	Tomato	nucleus	52.1	54.63
HORVU2Hr1G091830.4	Barley	cytosol	56.72	54.22
EES12559	Sorghum	cytosol	56.72	54.22
TraesCS2A01G368500.1	Wheat	cytosol	56.72	54.22
TraesCS2B01G385700.2	Wheat	cytosol	56.3	53.82
Os04t0534400-01	Rice	cytosol	56.3	53.6
TraesCS2D01G365300.2	Wheat	cytosol	55.88	53.41
Zm00001d051288_P001	Maize	cytosol	50.0	52.89
Zm00001d017390_P001	Maize	cytosol	50.0	52.89
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	50.42	52.63
TraesCS6D01G220300.1	Wheat	cytosol	50.42	52.63
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	50.0	52.19
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	50.0	52.19
KXG31128	Sorghum	cytosol	49.16	52.0
GSMUA_Achr8P11120_001	Banana	cytosol	59.24	50.36
GSMUA_Achr11P...	Banana	cytosol	41.6	49.5
HORVU7Hr1G071270.2	Barley	mitochondrion	59.66	48.14
PGSC0003DMT400076826	Potato	cytosol	11.76	46.67
Os02t0643000-01	Rice	plasma membrane	50.0	45.95
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	55.88	44.63
Bra022110.1-P	Field mustard	cytosol	39.5	43.12
Bra017499.1-P	Field mustard	cytosol	39.08	42.27
Bra022111.1-P	Field mustard	cytosol	38.66	41.82
Bra024958.1-P	Field mustard	cytosol	38.24	41.74
Zm00001d036342_P001	Maize	cytosol	38.66	36.8
Bra031641.1-P	Field mustard	cytosol	41.6	28.86
Bra018597.1-P	Field mustard	cytosol	41.18	26.42
Bra030744.1-P	Field mustard	cytosol	40.76	24.68

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra007547	EnsemblPlants:Bra007547.1	EnsemblPlants:Bra007547.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4CTK3
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00025428C3	InterPro:VAP	SEG:seg

Description

AT3G60600 (E=3e-107) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding

Coordinates

chrA09:+:29738592..29740519

Molecular Weight (calculated)

26516.8 Da

IEP (calculated)

7.924

GRAVY (calculated)

-0.436

Length

238 amino acids

Sequence
(BLAST)

001: MSNSELLTVE PLDLQFPFEL RKQISCSLYW PNKTDNHVAF KVKTTNPKKY CVRPNTGVVL PRSTCEVLVT MQAQKEAPSD MQCKDKFLLQ GVTASPGITA
101: KDVTPEMFSK EAGYLVEETK LRVTYVAPPQ PPSPVHEGSE EGSSPRASVS DNGQAAEFSF QRFSADKVEP QEGTSEARAL ITKLTEEKQS AIQLNNKLQR
201: ELEQLRRDSK RSQSGIPLMY VLLFGLIGLI LGYIMKST

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.