Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g090910.2.1 | Tomato | nucleus | 73.95 | 75.54 |
| Bra003313.1-P | Field mustard | cytosol | 66.81 | 71.3 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 71.43 | 71.13 |
| KRH65384 | Soybean | cytosol | 71.85 | 70.95 |
| KRH76164 | Soybean | endoplasmic reticulum | 71.43 | 70.54 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.91 | 68.62 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 68.91 | 68.62 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 68.91 | 68.62 |
| CDY56247 | Canola | cytosol | 68.49 | 67.92 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 68.49 | 67.63 |
| CDY57247 | Canola | cytosol | 68.07 | 67.5 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 67.65 | 66.81 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 65.97 | 65.69 |
| CDX71796 | Canola | cytosol | 65.55 | 65.55 |
| CDY41153 | Canola | cytosol | 65.55 | 65.55 |
| Solyc08g078690.2.1 | Tomato | cytosol | 60.92 | 65.32 |
| CDY48365 | Canola | cytosol | 65.55 | 65.27 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 65.13 | 64.85 |
| Bra007547.1-P | Field mustard | cytosol | 64.29 | 64.29 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 64.29 | 64.02 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 64.29 | 63.75 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 64.29 | 63.75 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 62.18 | 61.92 |
| EES12559 | Sorghum | cytosol | 63.45 | 60.64 |
| Os04t0534400-01 | Rice | cytosol | 63.03 | 60.0 |
| Os08t0156700-01 | Rice | plasma membrane | 60.92 | 59.67 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 60.5 | 59.26 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 60.5 | 59.26 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 61.76 | 59.04 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 61.34 | 58.63 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 61.34 | 58.63 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 60.92 | 58.23 |
| Zm00001d049553_P001 | Maize | plasma membrane | 59.66 | 58.2 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 54.62 | 57.02 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 58.4 | 56.97 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 54.2 | 56.58 |
| Zm00001d017390_P001 | Maize | cytosol | 53.36 | 56.44 |
| KXG31128 | Sorghum | cytosol | 53.36 | 56.44 |
| Zm00001d051288_P001 | Maize | cytosol | 53.36 | 56.44 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 53.78 | 56.14 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 53.36 | 55.7 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 50.0 | 55.61 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 55.88 | 55.42 |
| PGSC0003DMT400076826 | Potato | cytosol | 13.87 | 55.0 |
| Solyc06g034220.2.1 | Tomato | nucleus | 50.84 | 53.3 |
| Solyc08g007390.2.1 | Tomato | unclear | 44.12 | 52.24 |
| Os02t0643000-01 | Rice | plasma membrane | 55.88 | 51.35 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 58.82 | 50.0 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 62.18 | 49.66 |
| GSMUA_Achr11P... | Banana | cytosol | 41.6 | 49.5 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 60.5 | 48.81 |
| Bra035442.1-P | Field mustard | cytosol | 21.85 | 48.15 |
| Solyc08g078000.2.1 | Tomato | nucleus | 38.24 | 41.36 |
| Solyc08g007200.2.1 | Tomato | unclear | 35.71 | 39.53 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 16.81 | 39.22 |
| Zm00001d036342_P001 | Maize | cytosol | 39.92 | 38.0 |
| Solyc01g098200.2.1 | Tomato | cytosol | 43.7 | 32.91 |
| Solyc01g067720.2.1 | Tomato | plastid | 42.44 | 24.4 |
| AT1G51270.3 | Thale cress | cytosol | 52.1 | 19.47 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:K4CYV9 | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | EnsemblPlantsGene:Solyc10g018350.1 |
| EnsemblPlants:Solyc10g018350.1.1 | TMHMM:TMhelix | UniParc:UPI000276C786 | InterPro:VAP | SEG:seg | : |
Description
No Description!
Coordinates
chr10:-:7467408..7473894
Molecular Weight (calculated)
26554.9 Da
IEP (calculated)
8.852
GRAVY (calculated)
-0.480
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNGGELLQI DSVELQFPFE LKRQISCSMK LTNKSDNYVA FKVKTTNPKK YCVRPNTGIV MPHSSSEVKV TMQAQKEAPP DMQCKDKFLL QSVVASPGAA
101: AKDITPEMFN KESGNYVEDC KLKVVYVPPQ LRLPVREGSE EGSSPRASVS ENGAVNTSEF NNIARAYNEQ QDSSLETKAL ISKLTEEKNS VMQQNNKLQQ
201: ELELLRREHN RSRGGIPTVY VLVIALLGIL LGYLLKRT
101: AKDITPEMFN KESGNYVEDC KLKVVYVPPQ LRLPVREGSE EGSSPRASVS ENGAVNTSEF NNIARAYNEQ QDSSLETKAL ISKLTEEKNS VMQQNNKLQQ
201: ELELLRREHN RSRGGIPTVY VLVIALLGIL LGYLLKRT
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.