Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0534400-01 | Rice | cytosol | 83.13 | 82.8 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 79.92 | 79.92 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 79.92 | 79.92 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 79.52 | 79.52 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 79.12 | 79.12 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 91.57 | 76.51 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 65.46 | 68.2 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 65.06 | 67.78 |
| Solyc01g090910.2.1 | Tomato | nucleus | 60.64 | 64.81 |
| Solyc10g018350.1.1 | Tomato | cytosol | 60.64 | 63.45 |
| KXG31128 | Sorghum | cytosol | 56.63 | 62.67 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 59.84 | 62.34 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 59.84 | 61.07 |
| Bra003313.1-P | Field mustard | cytosol | 53.82 | 60.09 |
| AT2G45140.1 | Thale cress | cytosol | 57.43 | 59.83 |
| KRH65384 | Soybean | cytosol | 57.43 | 59.34 |
| KRH76164 | Soybean | endoplasmic reticulum | 57.43 | 59.34 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 55.82 | 58.16 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 55.42 | 57.74 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 55.42 | 57.74 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.42 | 57.74 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 55.82 | 57.68 |
| CDX71796 | Canola | cytosol | 55.02 | 57.56 |
| CDY41153 | Canola | cytosol | 55.02 | 57.56 |
| CDY57247 | Canola | cytosol | 55.42 | 57.5 |
| CDY56247 | Canola | cytosol | 55.42 | 57.5 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.42 | 57.5 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 55.42 | 57.5 |
| CDY48365 | Canola | cytosol | 54.62 | 56.9 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 54.62 | 56.9 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 55.02 | 56.85 |
| Bra007547.1-P | Field mustard | cytosol | 54.22 | 56.72 |
| AT3G60600.1 | Thale cress | cytosol | 57.83 | 56.25 |
| GSMUA_Achr11P... | Banana | cytosol | 44.98 | 56.0 |
| PGSC0003DMT400066920 | Potato | cytosol | 58.23 | 54.31 |
| AT2G23830.1 | Thale cress | cytosol | 32.13 | 53.69 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 60.24 | 53.57 |
| KXG24454 | Sorghum | cytosol | 51.41 | 53.11 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 48.19 | 52.86 |
| Solyc06g034220.2.1 | Tomato | nucleus | 45.78 | 50.22 |
| PGSC0003DMT400076826 | Potato | cytosol | 11.24 | 46.67 |
| EER91402 | Sorghum | cytosol | 50.6 | 46.32 |
| KXG26858 | Sorghum | cytosol, plastid | 40.16 | 40.98 |
| Bra035442.1-P | Field mustard | cytosol | 17.27 | 39.81 |
| EES07504 | Sorghum | plastid | 40.96 | 38.35 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 15.26 | 37.25 |
| OQU79125 | Sorghum | cytosol | 25.3 | 32.81 |
| EES05798 | Sorghum | plastid | 37.75 | 29.01 |
| KXG21863 | Sorghum | cytosol | 41.77 | 28.73 |
| EES04183 | Sorghum | cytosol | 39.76 | 26.26 |
| AT1G51270.3 | Thale cress | cytosol | 44.98 | 17.58 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:8083321 | UniProt:C5YCX9 | ncoils:Coil | EnsemblPlants:EES12559 |
| ProteinID:EES12559 | ProteinID:EES12559.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF49 | InterPro:PapD-like_sf | EnsemblPlantsGene:SORBI_3006G160200 | SUPFAM:SSF49354 | unigene:Sbi.12586 | TMHMM:TMhelix |
| UniParc:UPI0001A87448 | InterPro:VAP | RefSeq:XP_002448231.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:-:51829014..51831885
Molecular Weight (calculated)
27689.3 Da
IEP (calculated)
6.551
GRAVY (calculated)
-0.434
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDSKGLLE IEPLELRFPF ETKKQISCSM QLTNRTDDYI GFKVKTTSPK KYCVRPNSGI VPPRSTSDVI VAMQAQKEAP PDMQCKDKFL VQSVIVAEGT
101: LVKDITGHMF LKESGNVVDE VKLKVVYVPP PKPPSPVREG SEEGSSPRAS LSDGSNLNYL EMQTTRESDE PLFSAVKTHK DQEDYTSETS ALISKLTEER
201: NSAVQQNNKL REELDLLRRE VSKQNGGFSF VVVVAIALLG MLLGYIMKR
101: LVKDITGHMF LKESGNVVDE VKLKVVYVPP PKPPSPVREG SEEGSSPRAS LSDGSNLNYL EMQTTRESDE PLFSAVKTHK DQEDYTSETS ALISKLTEER
201: NSAVQQNNKL REELDLLRRE VSKQNGGFSF VVVVAIALLG MLLGYIMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.