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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d046383_P001 Maize plasma membrane 91.03 92.57
Os06t0581000-01 Rice plasma membrane 87.04 88.81
TraesCS7A01G365100.1 Wheat plasma membrane 83.72 85.86
Zm00001d036942_P001 Maize plasma membrane 76.74 85.56
Zm00001d036941_P001 Maize plasma membrane 85.55 84.56
TraesCS7D01G357300.2 Wheat plasma membrane 83.89 81.72
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 83.89 80.03
GSMUA_Achr7P08880_001 Banana plasma membrane 68.11 74.14
TraesCS7B01G262200.1 Wheat plasma membrane, plastid 83.72 73.04
CDY40277 Canola plasma membrane 30.23 71.37
Bra012431.1-P Field mustard plasma membrane 30.23 71.37
KRG99175 Soybean plasma membrane 68.77 70.77
KRH74766 Soybean plasma membrane 67.28 69.95
KRH45840 Soybean plasma membrane 68.77 69.7
KRH69373 Soybean plasma membrane 66.94 69.48
Solyc05g007000.2.1 Tomato plasma membrane 64.78 68.66
VIT_01s0026g01570.t01 Wine grape plasma membrane 66.45 68.38
KRH45842 Soybean plasma membrane 67.44 68.35
PGSC0003DMT400045415 Potato plasma membrane 65.28 68.35
PGSC0003DMT400007441 Potato plasma membrane 66.11 68.15
Solyc04g005790.2.1 Tomato plasma membrane 65.45 67.81
Solyc05g006990.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 64.95 66.72
GSMUA_Achr2P16840_001 Banana plasma membrane, plastid 66.78 66.67
AT1G69850.1 Thale cress plasma membrane 64.45 66.32
AT1G27040.1 Thale cress plasma membrane 62.13 65.96
KRH56961 Soybean plasma membrane 63.46 65.52
KRH03418 Soybean plasma membrane 63.12 65.29
CDY11649 Canola cytosol, peroxisome, plasma membrane 64.45 65.21
GSMUA_Achr6P00820_001 Banana plasma membrane 68.27 65.03
CDY40278 Canola plasma membrane 62.96 64.9
CDY28437 Canola plasma membrane 62.62 64.55
VIT_17s0000g05640.t01 Wine grape cytosol, plasma membrane, plastid 64.78 63.93
Bra010117.1-P Field mustard plasma membrane 58.8 63.78
PGSC0003DMT400045412 Potato mitochondrion 66.11 63.48
PGSC0003DMT400065182 Potato plasma membrane 61.96 63.33
CDY00323 Canola plasma membrane 58.97 62.94
CDX84348 Canola plasma membrane 58.64 62.59
CDY38765 Canola plasma membrane 64.95 60.15
AT5G62730.1 Thale cress plasma membrane 58.8 60.1
Solyc03g113250.2.1 Tomato plasma membrane 56.48 55.74
OQU81850 Sorghum plasma membrane 37.04 40.55
OQU81851 Sorghum plasma membrane 36.54 39.08
OQU87541 Sorghum cytosol, peroxisome, plasma membrane 39.04 38.34
EES12219 Sorghum plasma membrane 37.38 38.2
KXG26617 Sorghum plasma membrane 37.38 38.2
OQU83190 Sorghum plasma membrane 35.88 38.16
EES13374 Sorghum plasma membrane 37.87 37.94
KXG24751 Sorghum peroxisome, plasma membrane, vacuole 36.88 36.88
EES15875 Sorghum plasma membrane 34.72 36.73
EES15876 Sorghum plasma membrane 34.22 36.65
EES05323 Sorghum plasma membrane 36.21 36.52
EES14657 Sorghum plasma membrane 34.55 36.49
OQU83318 Sorghum mitochondrion, plasma membrane 31.06 36.45
KXG32694 Sorghum cytosol 35.38 36.29
EES11151 Sorghum plasma membrane 35.05 36.25
KXG28299 Sorghum plasma membrane 34.55 36.05
EER91957 Sorghum plasma membrane 35.55 35.97
EES15877 Sorghum plasma membrane 33.89 35.66
OQU93471 Sorghum plasma membrane 34.88 34.71
EES12425 Sorghum plasma membrane 26.41 29.23
EES00465 Sorghum plastid 32.06 28.94
EES19057 Sorghum plastid 9.97 24.0
Protein Annotations
Gene3D:1.20.1250.20MapMan:11.1.4.1MapMan:24.2.2.9EntrezGene:8065037UniProt:C5Z559EnsemblPlants:EER89980
ProteinID:EER89980ProteinID:EER89980.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF98EnsemblPlantsGene:SORBI_3010G175900SUPFAM:SSF103473
unigene:Sbi.2362TMHMM:TMhelixUniParc:UPI0001A89912RefSeq:XP_002438613.1SEG:seg:
Description
hypothetical protein
Coordinates
chr10:-:51332954..51345317
Molecular Weight (calculated)
64943.3 Da
IEP (calculated)
8.568
GRAVY (calculated)
0.411
Length
602 amino acids
Sequence
(BLAST)
001: MEDGARDAER WEGYVDWRNR PATRGRHGGM VAASFVLVVE VLENLAFLAN ASNLVTYLMG FMHYSPSQSA TTVTNFMGTA FLLALLGGFL SDAFFTTYTI
101: YILSAFIEFM GLVILTVQAR TPSLMPPQCA AKPAACEPVS GAKKAMLFAG LYLTALGVGG IKGSLPSHGA EQFDEHAPRG RKGRSTFFNY YVFCLSCGAL
201: IAVTFAVWVE DNKGWQWGFG ISTIAILLSI PVFVAGSRMY RNKVPTGSPL TTIAKVLVAA ALAGRRRGGC GYGAQSAISN GAVIDRAPSP TGSTDMKEYD
301: CKPGAGDMVE DAAAIVAASS AAAELPSQEL AFLNRAVQCQ PPRQGRLACT VQEVEDVKIV LMVLPIFLST IMLNCCLAQL STFSVEQAAT MDTRVGSLTV
401: PPASLPVFPV TFIIILAPVY DHAIVPFARR VTGTEMGITH LQRIGTGLVL SVVAMAVAAV VEVKRKDVAA SNGMLDSAKP LPITFFWIAF QYLFLGSADL
501: FTLAGLLEFF FSEAPPRMRS LATSLSWASL ALGYYLSSVL VSIVNSATGR GDHRPWLQGA SLNHYHLERF YWVMCVLSTL NYLFFLVLAI RYKYRNAGVI
601: KG
Best Arabidopsis Sequence Match ( AT1G69850.1 )
(BLAST)
001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
Arabidopsis Description
NPF4.6Protein NRT1/ PTR FAMILY 4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H157]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.