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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU88438

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 OQU88438 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 89.59 90.33
TraesCS4D01G361500.1 Wheat peroxisome 77.52 77.39
TraesCS5A01G537100.1 Wheat peroxisome 77.85 77.34
TraesCS4B01G371000.1 Wheat peroxisome 76.53 76.78
TraesCS4B01G375800.1 Wheat plasma membrane 77.02 76.77
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 78.02 76.01
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 70.91 72.84
EER91957 Sorghum plasma membrane 69.09 70.25
GSMUA_Achr8P11190_001 Banana peroxisome 65.45 70.09
GSMUA_Achr8P11180_001 Banana peroxisome 64.79 68.89
GSMUA_Achr11P... Banana plasma membrane 62.98 67.2
EES13374 Sorghum plasma membrane 66.61 67.05
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 63.8 65.42
GSMUA_Achr11P... Banana peroxisome 60.33 64.83
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 62.98 64.58
CDY30051 Canola cytosol, peroxisome, plasma membrane 36.69 63.61
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 61.32 62.88
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 60.99 62.54
KRH04097 Soybean peroxisome 61.32 62.46
KRH28055 Soybean plasma membrane 59.67 61.6
Bra019744.1-P Field mustard plasma membrane 27.27 61.57
KRH77380 Soybean cytosol, plasma membrane, plastid 59.5 61.43
CDY69100 Canola plasma membrane 33.55 61.14
VIT_02s0154g00260.t01 Wine grape plastid 63.97 60.09
Solyc06g060620.2.1 Tomato plasma membrane 58.51 59.8
KRH57369 Soybean plasma membrane 57.85 59.32
AT1G12110.1 Thale cress plasma membrane 57.85 59.32
CDY15967 Canola plasma membrane 56.2 59.23
Bra026991.1-P Field mustard plasma membrane 57.52 59.08
Bra016789.1-P Field mustard plasma membrane 57.19 58.64
PGSC0003DMT400035882 Potato plasma membrane 57.36 58.61
CDY26539 Canola plasma membrane 55.54 58.54
CDY21035 Canola plasma membrane 55.54 58.43
CDY31242 Canola plasma membrane 55.37 58.26
KXG32694 Sorghum cytosol 49.26 50.77
EES05323 Sorghum plasma membrane 48.59 49.25
EES12219 Sorghum plasma membrane 35.37 36.33
EER89980 Sorghum plasma membrane 34.71 34.88
OQU83190 Sorghum plasma membrane 32.56 34.81
EES15875 Sorghum plasma membrane 31.9 33.92
KXG24751 Sorghum peroxisome, plasma membrane, vacuole 33.72 33.89
OQU87541 Sorghum cytosol, peroxisome, plasma membrane 34.05 33.61
OQU81850 Sorghum plasma membrane 30.41 33.45
EES15876 Sorghum plasma membrane 30.58 32.92
OQU81851 Sorghum plasma membrane 30.58 32.86
EES15877 Sorghum plasma membrane 30.91 32.69
KXG26617 Sorghum plasma membrane 31.41 32.26
OQU83318 Sorghum mitochondrion, plasma membrane 27.27 32.16
EES00465 Sorghum plastid 34.38 31.18
KXG28299 Sorghum plasma membrane 29.26 30.68
EES11151 Sorghum plasma membrane 28.76 29.9
EES14657 Sorghum plasma membrane 27.93 29.65
EES19057 Sorghum plastid 12.23 29.6
EES12425 Sorghum plasma membrane 21.82 24.26
Protein Annotations
MapMan:24.2.2.9EntrezGene:8059535UniProt:C5WMU8ProteinID:EER95690.1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0006857GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0022857GO:GO:0055085InterPro:MFS_trans_sfProteinID:OQU93470.1EnsemblPlants:OQU93471ProteinID:OQU93471
ProteinID:OQU93471.1PFAM:PF00854InterPro:POT_famScanProsite:PS01022PANTHER:PTHR11654PANTHER:PTHR11654:SF142
InterPro:PTR2_symporter_CSEnsemblPlantsGene:SORBI_3001G541900SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0001A83332RefSeq:XP_002468692.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:-:80510701..80513576
Molecular Weight (calculated)
64614.7 Da
IEP (calculated)
8.962
GRAVY (calculated)
0.358
Length
605 amino acids
Sequence
(BLAST)
001: MADHDASSVP QTAAEGKLTT TTTMMDAWDY KGRPAVRGSS GGWSSAAMIL VVELNERLTT LGVGVNLVTY LMDTMHLGGA ASANAVTNFL GASFMLCLLG
101: GFVADTYLGR YLTIAIFTAV QAVGMCVLTV STAAPGLRPP ACADPTGPNH CVEPSGTQLG VLYLALYLTA LGTGGLKSSV SGFGSDQFDE SDGGERRSMA
201: RFFSWFFFFI SIGSLLAVTV LVYVQDHLGR RWGYGACVVA ILVGLLLFLA GTPRYRFKKL VGSPLTQIAA VTAAAWRKRA MPLPSDPAML YDVDDAVAAG
301: EDVKGKHKMP RTKQCRFLEK AAIVELEVEV QGSGNGKGKG KKWAACTLTD VEEVKQVVRM LPTWATTIPF WTVYAQMTTF SVSQAQAMDR RLGSSFEIPA
401: GSLTVFFVGS ILLTVPVYDR LVVPLARRLT ANPQGLSPLQ RISVGLLLSV LAMVAAALTE RARRSASLAG GATPSVFLLV PQFFLVGAGE AFTYVGQLDF
501: FLRECPRGMK TMSTGLFLST LSLGFFFSTA IVSAVHAVTT SGGRRPWLTD DLDQGSLHKF YWLLAAISAV DLLAFVAVAR GYVYKEKRLA EAGIQLVAHD
601: ASASA
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.