Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010783.1-P
Bra032374.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 Bra010783.1-P AT1G30270.1 19766570
AT1G12110.1 Bra032374.1-P AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21035 Canola plasma membrane 97.46 100.0
Bra026991.1-P Field mustard plasma membrane 94.75 94.91
AT1G12110.1 Thale cress plasma membrane 92.37 92.37
Bra019744.1-P Field mustard plasma membrane 41.02 90.3
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 67.8 67.8
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 67.8 67.8
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 67.63 67.63
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 67.29 67.29
KRH28055 Soybean plasma membrane 63.73 64.16
GSMUA_Achr8P11180_001 Banana peroxisome 61.53 63.8
KRH77380 Soybean cytosol, plasma membrane, plastid 63.22 63.65
GSMUA_Achr11P... Banana plasma membrane 60.85 63.32
EES13374 Sorghum plasma membrane 63.73 62.56
GSMUA_Achr8P11190_001 Banana peroxisome 59.66 62.3
Os08t0155400-01 Rice plasma membrane 55.08 61.9
Solyc06g060620.2.1 Tomato plasma membrane 61.86 61.66
VIT_02s0154g00260.t01 Wine grape plastid 67.29 61.65
KRH04097 Soybean peroxisome 62.03 61.62
TraesCS7D01G297000.1 Wheat plasma membrane 62.71 61.36
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 60.68 61.3
TraesCS7B01G201900.1 Wheat plasma membrane 62.54 61.19
GSMUA_Achr1P20240_001 Banana plasma membrane 61.36 61.05
TraesCS7A01G301700.1 Wheat plasma membrane 62.37 61.03
Zm00001d024587_P001 Maize plasma membrane 62.88 61.02
PGSC0003DMT400035882 Potato plasma membrane 61.19 60.98
EER91957 Sorghum plasma membrane 61.36 60.84
Zm00001d029932_P001 Maize plasma membrane 61.36 60.84
Os10t0554200-02 Rice plasma membrane 60.85 60.23
TraesCS1B01G224900.1 Wheat plasma membrane 60.51 59.9
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 59.66 59.86
TraesCS1D01G214200.1 Wheat plasma membrane 60.34 59.73
HORVU7Hr1G071600.2 Barley mitochondrion 62.71 59.58
GSMUA_Achr11P... Banana peroxisome 56.78 59.5
TraesCS1B01G225000.1 Wheat plasma membrane 59.66 59.16
TraesCS1A01G211000.1 Wheat cytosol 59.66 59.16
TraesCS1D01G214300.1 Wheat plasma membrane 59.32 58.82
KRH57369 Soybean plasma membrane 58.64 58.64
HORVU1Hr1G053990.4 Barley peroxisome 60.85 58.18
TraesCS4D01G361500.1 Wheat peroxisome 59.66 58.09
TraesCS5A01G537100.1 Wheat peroxisome 59.66 57.8
TraesCS1A01G210900.1 Wheat plasma membrane 47.12 57.56
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 57.46 57.56
TraesCS4B01G371000.1 Wheat peroxisome 58.64 57.38
OQU93471 Sorghum plasma membrane 58.64 57.19
TraesCS4B01G375800.1 Wheat plasma membrane 58.81 57.17
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 57.97 57.0
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 58.98 56.04
GSMUA_Achr6P36750_001 Banana plasma membrane 61.69 55.07
Bra012052.1-P Field mustard plasma membrane 44.92 50.86
Bra023868.1-P Field mustard plasma membrane 46.44 47.4
Bra031295.1-P Field mustard plasma membrane 45.42 45.89
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 41.86 45.24
Bra012431.1-P Field mustard plasma membrane 17.12 39.61
Bra011937.1-P Field mustard plasma membrane 32.71 37.26
Bra013221.1-P Field mustard plasma membrane 31.53 36.05
Bra013222.1-P Field mustard plasma membrane 31.36 35.92
Bra028002.1-P Field mustard peroxisome 36.1 35.5
Bra027836.1-P Field mustard plasma membrane 35.93 35.16
Bra035429.1-P Field mustard plasma membrane 34.75 34.51
Bra010117.1-P Field mustard plasma membrane 32.2 34.23
Bra023408.1-P Field mustard plastid 33.73 31.99
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9EnsemblPlantsGene:Bra016789EnsemblPlants:Bra016789.1EnsemblPlants:Bra016789.1-PGO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006857GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0022857GO:GO:0055085UniProt:M4DJW1InterPro:MFS_trans_sfPFAM:PF00854
InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654PANTHER:PTHR11654:SF78InterPro:PTR2_symporter_CS
SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0002546216SEG:seg::
Description
AT1G12110 (E=8e-281) NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | NRT1.1; nitrate transmembrane transporter/ transporter
Coordinates
chrA08:-:19988776..19992465
Molecular Weight (calculated)
65089.0 Da
IEP (calculated)
8.631
GRAVY (calculated)
0.361
Length
590 amino acids
Sequence
(BLAST)
001: MSLPETKSQT LLDAWDFQGR PADRSKTGGW ASAAMILCIE AVERLTTLGI GVNLVTYLTG TMHLGNATAA NTVTNFLGTS FMLCLLGGFI ADTFLGRYLT
101: IAIFAAIQAT GVSILTLSTI IPGLRPPRCN PTTSSHCVQA SGIQLTVLYL ALYLTALGTG GVKASVSGFG SDQFDETEPK EQSQMTYFFN RFFFCINVGS
201: LCAVTVLVYI QDDVGRKWGY GICALSIVLA LSVFLAGTNR YRFKKLIGSP MTQVATVIVA AWRNRRLELP SDPSFLYDLD DVIAAEGAMK SKQKLPHTKQ
301: FRSLDKAAIK NQETAMTQNV FNKWTLSTLT DVEEVKQIVR MLPIWATCIL FWTVHAQLTT LSVAQSETMD RHIGSFEIPP ASMAVFYVGG LLLTTAVYDR
401: VAIPLCKKLF NYPHGLRPLQ RIGLGLILAA VGMAVAALVE IKRLRTAHSH GPTVKTLPLG FYLLIPQYLI VGIGEALIYT GQLDFFLREC PKGMKTMSTG
501: LLLSTLALGF FFSSVLVTIV EKFTDKAHPW IADDLNKGRL YNFYWLVAVV VFLNFLIFLV FSKWYVYKDK RLAELGIELE DETDIPMGHA
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.