Factsheet for TraesCS1A01G211000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

cytosol: 29762476
nucleus: 29762476

gfp PMID: 29762476 doi

T Gao, GZ Li, CR Wang, J Dong, SS Yuan, YH Wang, GZ Kang

The Collaborative Center Innovation of Henan Food Crops, Henan Agricultural University, Zhengzhou 450002, China. dongjie@henau.edu.cn., The Collaborative Center Innovation of Henan Food Crops, Henan Agricultural University, Zhengzhou 450002, China. gaotian1211@henau.edu.cn., The Collaborative Center Innovation of Henan Food Crops, Henan Agricultural University, Zhengzhou 450002, China. shashayuan@henau.edu.cn., The National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China. guozhangkang@henau.edu.cn., The National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China. ligezi@henau.edu.cn., The National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China. wangyonghua88@henau.edu.cn., The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China. gaotian1211@henau.edu.cn., The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China. guozhangkang@henau.edu.cn., The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China. wangchuanren@henau.edu.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G251800.1
TraesCS2B01G271700.1
TraesCS2D01G252600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12110.1	TraesCS2A01G251800.1	AT1G30270.1	19766570
AT1G12110.1	TraesCS2B01G271700.1	AT1G30270.1	19766570
AT1G12110.1	TraesCS2D01G252600.1	AT1G30270.1	19766570

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G214300.1	Wheat	plasma membrane	98.99	98.99
TraesCS1B01G225000.1	Wheat	plasma membrane	98.49	98.49
TraesCS1A01G210900.1	Wheat	plasma membrane	72.77	89.65
Zm00001d029932_P001	Maize	plasma membrane	84.71	84.71
EER91957	Sorghum	plasma membrane	84.54	84.54
Os10t0554200-02	Rice	plasma membrane	84.54	84.4
Zm00001d029933_P001	Maize	cytosol, peroxisome, plasma membrane	82.86	83.84
HORVU1Hr1G054020.3	Barley	mitochondrion, peroxisome, plastid	70.59	76.92
TraesCS5A01G537100.1	Wheat	peroxisome	71.09	69.46
GSMUA_Achr8P11190_001	Banana	peroxisome	64.37	67.79
GSMUA_Achr11P...	Banana	plasma membrane	64.37	67.55
GSMUA_Achr8P11180_001	Banana	peroxisome	64.03	66.96
KRH28055	Soybean	plasma membrane	64.87	65.87
KRH77380	Soybean	cytosol, plasma membrane, plastid	64.2	65.19
PGSC0003DMT400012226	Potato	cytosol, peroxisome, plasma membrane	63.87	64.41
TraesCS7A01G301700.1	Wheat	plasma membrane	65.21	64.34
Solyc08g078950.2.1	Tomato	cytosol, peroxisome, plasma membrane	63.36	63.9
GSMUA_Achr11P...	Banana	peroxisome	60.0	63.41
CDY30051	Canola	cytosol, peroxisome, plasma membrane	37.14	63.32
PGSC0003DMT400032493	Potato	cytosol, peroxisome, plasma membrane	61.68	62.2
Solyc08g007430.1.1	Tomato	cytosol, peroxisome, plasma membrane	61.18	61.69
KRH04097	Soybean	peroxisome	60.84	60.94
CDY69100	Canola	plasma membrane	33.95	60.84
Bra019744.1-P	Field mustard	plasma membrane	27.39	60.82
CDY15967	Canola	plasma membrane	58.49	60.63
CDY26539	Canola	plasma membrane	58.32	60.45
Bra026991.1-P	Field mustard	plasma membrane	59.66	60.27
AT1G12110.1	Thale cress	plasma membrane	59.33	59.83
Bra016789.1-P	Field mustard	plasma membrane	59.16	59.66
CDY21035	Canola	plasma membrane	57.65	59.65
CDY31242	Canola	plasma membrane	57.48	59.48
VIT_02s0154g00260.t01	Wine grape	plastid	64.37	59.47
KRH57369	Soybean	plasma membrane	57.82	58.31
Solyc06g060620.2.1	Tomato	plasma membrane	57.82	58.11
PGSC0003DMT400035882	Potato	plasma membrane	57.31	57.6
TraesCS1A01G031300.1	Wheat	peroxisome	49.24	50.34
TraesCS5A01G409600.1	Wheat	plasma membrane	47.23	47.31
TraesCS2A01G335800.1	Wheat	mitochondrion	46.72	45.95
TraesCS7A01G365100.1	Wheat	plasma membrane	35.97	36.46
TraesCS2A01G309100.1	Wheat	plasma membrane	33.95	34.83
TraesCS3A01G272600.1	Wheat	plasma membrane	30.92	34.52
TraesCS4A01G225400.1	Wheat	golgi, peroxisome, plasma membrane, plastid	34.96	34.32
TraesCS3A01G081100.3	Wheat	cytosol, peroxisome, plasma membrane, plastid	35.29	33.39
TraesCS2A01G350300.1	Wheat	plasma membrane	28.74	32.2
TraesCS5A01G388000.1	Wheat	plasma membrane	31.43	32.13
TraesCS2A01G350100.1	Wheat	plasma membrane	29.41	31.31
TraesCS5A01G056100.1	Wheat	plasma membrane	24.54	30.74
TraesCS2A01G264500.1	Wheat	plasma membrane	29.08	29.88
TraesCS5A01G056200.2	Wheat	plasma membrane	27.73	29.36
TraesCS2A01G350000.1	Wheat	plasma membrane	25.21	27.73

Protein Annotations

EnsemblPlants:TraesCS1A01G211000.1	EnsemblPlantsGene:TraesCS1A01G211000	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006857	GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:MFS_trans_sf
InterPro:POT_fam	InterPro:PTR2_symporter_CS	PANTHER:PTHR11654	PANTHER:PTHR11654:SF136	PFAM:PF00854	ScanProsite:PS01022
SUPFAM:SSF103473	TMHMM:TMhelix	MapMan:24.2.2.9	:	:	:

Description

No Description!

Coordinates

chr1A:-:373770855..373774889

Molecular Weight (calculated)

63918.0 Da

IEP (calculated)

7.442

GRAVY (calculated)

0.381

Length

595 amino acids

Sequence
(BLAST)

001: MGSEALPETV AEAGKQGAAL TDAWDYKGRP AARATTGGWG CAAMILGAEL FERMTTLGIA VNLVPYMTGT MHLGSAASAN TVTNFIGTSF MLCLLGGFIA
101: DSYLGRYLTI AVFSAVQATG VMILTISTVA PGLRPAACGD ATGQSPDCVP ANGTQLGVLY LGLYMTALGT GGLKSSVSGF GSDQFDESDD GERKMMMRFF
201: NWFYFFVSIG ALLAVTVLVY VQDNVGRRWG YGVVAVGILC GLGVFLSGTR KYRFKKLVGS PLTQVATVTA AAWRKRSLPL PSDPSMLYDV DDKAAAGEDL
301: KGKLKLPHSK ECRFLDHAAV VDRESPAAAS SWTLCTRTDV EEVKQVVRML PIWATTIMFW TIHAQMTTFA VEQASVMNRA IGGSGFLIPA GSLTVFLIGS
401: ILLTVPLYDR LVAPVARRVT GNPHGLSPLQ RVFVGLFLSI AGMAAAALVE RYRLTESADG VTLTVFLLMP QFLLVGAGEA FTYMGQLDFF LRECPKGMKT
501: MSTGLFLSTC ALGFFFSTLI VTIVHKVTGH GSNDGWLANN IDQGRLDYFY WLLAVMSAIN IVFFTIAARG YVYKEKRMAD AGIELADEEA MIVGH

Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)

001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH

Arabidopsis Description

NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.