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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90240
CDY26276
CDY49976
CDY63182

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 CDX90240 AT1G30270.1 19766570
AT1G12110.1 CDY26276 AT1G30270.1 19766570
AT1G12110.1 CDY49976 AT1G30270.1 19766570
AT1G12110.1 CDY63182 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019744.1-P Field mustard plasma membrane 68.77 89.55
CDY69100 Canola plasma membrane 82.81 87.05
CDY31242 Canola plasma membrane 95.42 57.91
CDY21035 Canola plasma membrane 95.42 57.91
CDY15967 Canola plasma membrane 93.98 57.14
CDY26539 Canola plasma membrane 92.84 56.45
AT1G12110.1 Thale cress plasma membrane 92.26 54.58
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 71.63 42.37
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 71.35 42.2
GSMUA_Achr8P11180_001 Banana peroxisome 67.62 41.48
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 69.91 41.36
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 69.05 40.85
GSMUA_Achr1P20240_001 Banana plasma membrane 69.05 40.64
GSMUA_Achr11P... Banana plasma membrane 65.9 40.56
GSMUA_Achr8P11190_001 Banana peroxisome 65.33 40.35
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 66.76 39.9
CDY40277 Canola plasma membrane 28.94 39.61
KRH28055 Soybean plasma membrane 66.19 39.42
EES13374 Sorghum plasma membrane 67.62 39.27
Zm00001d024587_P001 Maize plasma membrane 68.19 39.14
KRH77380 Soybean cytosol, plasma membrane, plastid 65.33 38.91
GSMUA_Achr11P... Banana peroxisome 62.18 38.54
TraesCS7B01G201900.1 Wheat plasma membrane 66.19 38.31
TraesCS7D01G297000.1 Wheat plasma membrane 66.19 38.31
Os10t0554200-02 Rice plasma membrane 65.33 38.26
TraesCS7A01G301700.1 Wheat plasma membrane 65.9 38.14
VIT_02s0154g00260.t01 Wine grape plastid 70.2 38.04
EER91957 Sorghum plasma membrane 64.47 37.82
Zm00001d029932_P001 Maize plasma membrane 64.18 37.65
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 63.32 37.59
TraesCS1B01G224900.1 Wheat plasma membrane 64.18 37.58
Solyc06g060620.2.1 Tomato plasma membrane 63.61 37.5
TraesCS1B01G225000.1 Wheat plasma membrane 63.9 37.48
TraesCS1D01G214200.1 Wheat plasma membrane 63.9 37.42
HORVU7Hr1G071600.2 Barley mitochondrion 66.48 37.36
PGSC0003DMT400035882 Potato plasma membrane 63.32 37.33
TraesCS1A01G211000.1 Wheat cytosol 63.32 37.14
TraesCS1D01G214300.1 Wheat plasma membrane 63.32 37.14
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 62.46 37.01
TraesCS4D01G361500.1 Wheat peroxisome 63.9 36.8
KRH04097 Soybean peroxisome 62.46 36.7
OQU93471 Sorghum plasma membrane 63.61 36.69
GSMUA_Achr6P36750_001 Banana plasma membrane 69.05 36.46
TraesCS5A01G537100.1 Wheat peroxisome 63.61 36.45
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 62.46 36.33
HORVU1Hr1G053990.4 Barley peroxisome 64.18 36.3
TraesCS4B01G371000.1 Wheat peroxisome 62.18 35.99
TraesCS4B01G375800.1 Wheat plasma membrane 62.46 35.91
Os08t0155400-01 Rice plasma membrane 53.01 35.24
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 62.46 35.1
KRH57369 Soybean plasma membrane 58.74 34.75
CDY44319 Canola plasma membrane 46.7 34.61
CDY38629 Canola plasma membrane 46.7 34.03
CDY45207 Canola golgi, plasma membrane 54.73 32.54
CDX71495 Canola plasma membrane 54.73 31.83
CDY30787 Canola mitochondrion 54.73 31.78
CDY70795 Canola plasma membrane 27.22 30.06
TraesCS1A01G210900.1 Wheat plasma membrane 40.97 29.61
CDY67653 Canola peroxisome 30.66 29.48
CDY04575 Canola plasma membrane 33.81 22.78
CDY15763 Canola plasma membrane 30.95 22.09
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 34.1 21.79
CDY52284 Canola plasma membrane 31.81 21.55
CDY52286 Canola plasma membrane 31.81 21.51
CDY40278 Canola plasma membrane 35.53 21.23
CDX91126 Canola plastid 37.82 21.22
CDX85654 Canola cytosol, plasma membrane, plastid 37.82 21.22
CDY28437 Canola plasma membrane 35.24 21.06
CDY11649 Canola cytosol, peroxisome, plasma membrane 35.82 21.01
CDY50182 Canola plasma membrane 34.67 20.58
CDX93764 Canola plasma membrane 35.24 20.5
CDX84348 Canola plasma membrane 31.23 19.33
CDY00323 Canola plasma membrane 31.23 19.33
CDY38765 Canola plasma membrane 35.82 19.23
CDY15100 Canola plasma membrane 32.09 19.18
CDY45893 Canola golgi, peroxisome, plasma membrane 23.5 17.19
CDY65523 Canola plastid 9.46 10.19
CDY45147 Canola mitochondrion 9.17 9.64
Protein Annotations
MapMan:24.2.2.9GO:A0A078GX28UniProt:A0A078GX28EnsemblPlants:CDY30051ProteinID:CDY30051ProteinID:CDY30051.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006857GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00044594001InterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654PANTHER:PTHR11654:SF78
InterPro:PTR2_symporter_CSSUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0004EDD99CSEG:seg:
Description
BnaC05g09690DBnaC05g09690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX28]
Coordinates
chrLK032248:+:234209..242853
Molecular Weight (calculated)
38102.2 Da
IEP (calculated)
7.976
GRAVY (calculated)
0.225
Length
349 amino acids
Sequence
(BLAST)
001: MSLPETKSQT LLDAWDFQGR PADRSKTGGW ASAAMILCIE AVERLTTLGI GVNLVTYLTG TMHLGNATAA NTVTNFLGTS FMLCLLGGFI ADTFLGRYLT
101: IAIFAAIQAT GVSILTLSTI IPGLQPPRCN PTTSSHCVQA SGIQLTVLYL ALYLTALGTG GVKASVSGFG SDQFDETEPK EQSQMTYFFN RFFFCINVGS
201: LLAVTVLVYI QDDVGRKWGY GLCAFSIVLS LSIFLAGTNC YRFKKLIGSP MTQVAAVIVA AWRNRRLELP SDPSYLYDLD DSKQKLPHTK QFRSLDKAAI
301: KDQEAAMTQN VFNKWTLSTL TDVEEVKQIV RMLPIWATCA SSFGPSMHN
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.