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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38629 Canola plasma membrane 97.88 96.24
Bra031295.1-P Field mustard plasma membrane 97.03 78.25
AT3G21670.1 Thale cress plasma membrane 91.3 72.88
HORVU2Hr1G065480.1 Barley golgi, plasma membrane 30.15 63.11
KRH73378 Soybean cytosol, peroxisome, plasma membrane 68.15 54.59
KRH14759 Soybean plasma membrane 67.73 54.34
PGSC0003DMT400001784 Potato cytosol, peroxisome, plasma membrane 65.61 52.11
Solyc12g006050.1.1 Tomato cytosol, peroxisome, plasma membrane 65.39 52.03
Solyc07g049290.2.1 Tomato nucleus 65.18 51.95
PGSC0003DMT400010957 Potato cytosol, peroxisome, plasma membrane 64.33 51.18
VIT_12s0059g01240.t01 Wine grape plastid 70.28 51.0
TraesCS5A01G409600.1 Wheat plasma membrane 62.42 49.49
TraesCS5D01G419200.2 Wheat plasma membrane 62.21 49.24
GSMUA_Achr3P05990_001 Banana cytosol, plasma membrane, plastid 59.66 48.95
Zm00001d016982_P001 Maize plasma membrane 61.78 48.83
TraesCS5B01G414000.3 Wheat plasma membrane 61.57 48.82
EES05323 Sorghum plasma membrane 61.78 48.74
HORVU5Hr1G099170.6 Barley plasma membrane 62.21 48.03
Os02t0580900-01 Rice plasma membrane 61.78 47.78
CDY30051 Canola cytosol, peroxisome, plasma membrane 34.61 46.7
TraesCS2D01G327000.1 Wheat plasma membrane 55.84 46.55
TraesCS2B01G346100.1 Wheat plasma membrane 55.2 46.02
TraesCS2A01G335800.1 Wheat mitochondrion 55.84 43.47
CDY69100 Canola plasma membrane 30.57 43.37
CDY40277 Canola plasma membrane 21.44 39.61
CDY45207 Canola golgi, plasma membrane 45.65 36.63
CDX71495 Canola plasma membrane 45.86 36.0
CDY30787 Canola mitochondrion 45.65 35.77
CDY31242 Canola plasma membrane 43.52 35.65
CDY21035 Canola plasma membrane 43.1 35.3
CDY26539 Canola plasma membrane 42.68 35.02
CDY15967 Canola plasma membrane 42.46 34.84
Os04t0464400-00 Rice peroxisome, plasma membrane 43.74 33.07
CDY70795 Canola plasma membrane 21.23 31.65
VIT_02s0087g00580.t01 Wine grape plasma membrane 18.47 29.39
CDY28437 Canola plasma membrane 35.24 28.42
CDY40278 Canola plasma membrane 35.24 28.42
CDY67653 Canola peroxisome 21.66 28.1
CDY11649 Canola cytosol, peroxisome, plasma membrane 35.46 28.07
CDX93764 Canola plasma membrane 35.24 27.67
CDY50182 Canola plasma membrane 34.18 27.38
CDX84348 Canola plasma membrane 32.7 27.3
CDY00323 Canola plasma membrane 32.7 27.3
CDY45893 Canola golgi, peroxisome, plasma membrane 26.33 26.0
CDY38765 Canola plasma membrane 35.67 25.85
CDX91126 Canola plastid 33.97 25.72
CDX85654 Canola cytosol, plasma membrane, plastid 33.76 25.56
CDY04575 Canola plasma membrane 28.03 25.48
CDY15763 Canola plasma membrane 26.11 25.15
CDY52284 Canola plasma membrane 26.75 24.47
CDY52286 Canola plasma membrane 26.75 24.42
CDY15100 Canola plasma membrane 27.18 21.92
CDY65523 Canola plastid 14.65 21.3
CDY45147 Canola mitochondrion 14.65 20.78
HORVU2Hr1G081050.1 Barley endoplasmic reticulum, extracellular 0.85 5.8
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:A0A078I429UniProt:A0A078I429EnsemblPlants:CDY44319ProteinID:CDY44319
ProteinID:CDY44319.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00079962001InterPro:MFS_trans_sf
PFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF154SUPFAM:SSF103473TMHMM:TMhelix
UniParc:UPI0004EEAFFESEG:seg::::
Description
BnaC05g30740DBnaC05g30740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I429]
Coordinates
chrLK032586:+:55018..70778
Molecular Weight (calculated)
51911.5 Da
IEP (calculated)
9.007
GRAVY (calculated)
0.203
Length
471 amino acids
Sequence
(BLAST)
001: MYLYLSYHVH VSSHGAKDGS EEAFDYRGNP PDKSKTGGWL GAGLILGSEL SERICVMGIS MNLVTYLVGD LHISSAKSAT IVTNFMGTLN LLGLLGGFLA
101: DAKLGRYKMV AISASVTALG VLLLTVATTI PSMRPPLCDD FRRLHHQCVE ANGHQLALLY VALYTIALGG GGIKSNVSGF GSDQFDTSDP KEEKQMIFFF
201: NRFYFSISLG SLFAVIVLVY VQDNVGRGWG YGISAATMVV AAVVLLCGTK LYRFKKPKGS PFTVIWRVCF LAWKKRNQSY PSHQSLLNGY DNTTVPHTER
301: LKCLDKAAVV FKEKDPWMVS TVTQVEEVKL VVKLIPIWAT NILFWTIYSQ MTTFTVEQAT FMERKLGSFT VPAGSYSAFL ILTILLFTSL NERVFVPLAR
401: MVTKKPQGIT SLQRIGVGLV LSMAAMAVAA VIENARREAE HQYKADMISV GVDDSVEKEK EKSELELKDI P
Best Arabidopsis Sequence Match ( AT3G21670.1 )
(BLAST)
001: MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP
Arabidopsis Description
NPF6.4Protein NRT1/ PTR FAMILY 6.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVE0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.