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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 2
  • plastid 1
  • vacuole 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400010957 Potato cytosol, peroxisome, plasma membrane 96.79 96.79
Solyc07g049290.2.1 Tomato nucleus 81.08 81.22
KRH14759 Soybean plasma membrane 70.1 70.7
KRH73378 Soybean cytosol, peroxisome, plasma membrane 69.59 70.07
Bra023868.1-P Field mustard plasma membrane 65.88 67.47
GSMUA_Achr3P05990_001 Banana cytosol, plasma membrane, plastid 65.37 67.42
VIT_12s0059g01240.t01 Wine grape plastid 72.97 66.56
Bra031295.1-P Field mustard plasma membrane 65.2 66.1
AT3G21670.1 Thale cress plasma membrane 65.54 65.76
CDY44319 Canola plasma membrane 52.03 65.39
VIT_02s0087g00580.t01 Wine grape plasma membrane 32.26 64.53
CDY38629 Canola plasma membrane 51.86 64.09
EES05323 Sorghum plasma membrane 64.02 63.48
TraesCS5B01G414000.3 Wheat plasma membrane 63.51 63.3
TraesCS5D01G419200.2 Wheat plasma membrane 63.51 63.19
Os02t0580900-01 Rice plasma membrane 64.86 63.05
TraesCS5A01G409600.1 Wheat plasma membrane 63.18 62.96
Zm00001d016982_P001 Maize plasma membrane 63.34 62.92
TraesCS2D01G327000.1 Wheat plasma membrane 59.8 62.65
TraesCS2B01G346100.1 Wheat plasma membrane 59.29 62.12
HORVU2Hr1G065480.1 Barley golgi, plasma membrane 23.31 61.33
HORVU5Hr1G099170.6 Barley plasma membrane 62.67 60.82
TraesCS2A01G335800.1 Wheat mitochondrion 59.29 58.02
HORVU2Hr1G081050.1 Barley endoplasmic reticulum, extracellular 6.25 53.62
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 51.18 51.36
Solyc07g032490.2.1 Tomato plasma membrane 48.48 50.44
Solyc01g096880.2.1 Tomato plasma membrane 48.48 50.0
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 49.66 49.83
Solyc06g060620.2.1 Tomato plasma membrane 47.8 47.8
Solyc08g061020.1.1 Tomato plasma membrane 23.48 46.33
Solyc08g061010.2.1 Tomato plasma membrane 19.43 43.23
Os04t0464400-00 Rice peroxisome, plasma membrane 40.2 38.2
Solyc05g007000.2.1 Tomato plasma membrane 35.81 37.32
Solyc05g006990.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 35.98 36.35
Solyc01g103030.2.1 Tomato cytosol, peroxisome, plasma membrane 37.16 36.3
Solyc11g042820.1.1 Tomato peroxisome, plasma membrane, vacuole 35.98 35.92
Solyc04g005790.2.1 Tomato plasma membrane 34.29 34.94
Solyc04g079510.1.1 Tomato plasma membrane 33.45 34.68
Solyc04g079520.2.1 Tomato plasma membrane 33.28 33.85
Solyc04g079530.2.1 Tomato plasma membrane 32.77 33.51
Solyc10g039290.1.1 Tomato plasma membrane 32.09 33.22
Solyc03g005950.1.1 Tomato plasma membrane 34.29 32.38
Solyc01g102360.1.1 Tomato plasma membrane 33.11 32.18
Solyc03g113250.2.1 Tomato plasma membrane 31.59 30.66
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9ncoils:CoilGO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:IPR020846UniProt:K4DBE3InterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_fam
PANTHER:PTHR11654PANTHER:PTHR11654:SF154SUPFAM:SSF103473EnsemblPlantsGene:Solyc12g006050.1EnsemblPlants:Solyc12g006050.1.1TMHMM:TMhelix
UniParc:UPI000276A62DSEG:seg::::
Description
No Description!
Coordinates
chr12:+:645791..648040
Molecular Weight (calculated)
65326.4 Da
IEP (calculated)
8.301
GRAVY (calculated)
0.230
Length
592 amino acids
Sequence
(BLAST)
001: MVLVHNHAEK DGSNDGGLVD FRGNPVDKSR TGGWLGAGLI LGTELSERIC VMGISMNLVT YLVGDLHLPS SDSANIVTNF MGTLNLLALL GGFLADAKLG
101: RYATIAIFGC IAAVGVTLLT LATSIPSMKP PVCDSRSKGH CIEASGQQLA LLYAALYTIS LGCGGIKSSV SGFGSDQFDS SNPKENKAMI YFFNRFYFCI
201: SLGSLFAVTV LVYIQDNVGR GWGYGISAGT MVLAVAVLLC GTSLYRFKKP EGSPLTIIWR VLILAWRKRK ISHPSDPGFL NEYHNAKVPH TKMLRCLDKA
301: AIIDDYAVAD ENRISSWIVS TVSQVEEVKM VLKLIPIWST CILFWTVYSQ MNTFSIEQAT FMNRNVGKFG IPAGSFSFFL FISILLFTSL NERVTVPIAR
401: RITGNRQGLT SLQRVGIGLI LSIVGMVAAA VVEKQRRENA IHHDYNISAF WLVPQFFIVG AGEAFAYVGQ LEFFIREAPE GMKSMSTGLF LSTLSMGFFM
501: SSLLVSIVHK VTNGSWLKNN LNNGKLDYFY WMLAVLGVLN YFVFLVFSTR HQYKTQHLST TLEDSEEELK NWNDTSIDNT QKNPNDAEKE QV
Best Arabidopsis Sequence Match ( AT3G21670.1 )
(BLAST)
001: MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR
101: YKMVAISASV TALGVLLLTV ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD TSDPKEEKQM IFFFNRFYFS
201: ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK
301: AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV
401: PLTRRLTKKP QGITSLQRIG VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR EAPERMKSMS TGLFLSTISM
501: GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP
Arabidopsis Description
NPF6.4Protein NRT1/ PTR FAMILY 6.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVE0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.