Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g021440.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | Solyc02g021440.2.1 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 98.64 | 98.64 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 83.39 | 83.39 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 76.44 | 76.18 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 40.85 | 69.05 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 75.25 | 68.94 |
| GSMUA_Achr8P11180_001 | Banana | peroxisome | 66.1 | 68.54 |
| GSMUA_Achr11P... | Banana | plasma membrane | 65.59 | 68.25 |
| GSMUA_Achr8P11190_001 | Banana | peroxisome | 65.25 | 68.14 |
| KRH04097 | Soybean | peroxisome | 68.31 | 67.85 |
| Bra016789.1-P | Field mustard | plasma membrane | 67.29 | 67.29 |
| CDY31242 | Canola | plasma membrane | 65.42 | 67.13 |
| CDY21035 | Canola | plasma membrane | 65.42 | 67.13 |
| CDY26539 | Canola | plasma membrane | 65.08 | 66.9 |
| CDY15967 | Canola | plasma membrane | 65.08 | 66.9 |
| Bra026991.1-P | Field mustard | plasma membrane | 66.61 | 66.72 |
| AT1G12110.1 | Thale cress | plasma membrane | 66.27 | 66.27 |
| CDY69100 | Canola | plasma membrane | 37.29 | 66.27 |
| Bra019744.1-P | Field mustard | plasma membrane | 30.0 | 66.04 |
| Os08t0155400-01 | Rice | plasma membrane | 57.63 | 64.76 |
| EES13374 | Sorghum | plasma membrane | 65.93 | 64.73 |
| GSMUA_Achr1P20240_001 | Banana | plasma membrane | 64.75 | 64.42 |
| KRH57369 | Soybean | plasma membrane | 64.41 | 64.41 |
| GSMUA_Achr11P... | Banana | peroxisome | 61.36 | 64.3 |
| TraesCS7B01G201900.1 | Wheat | plasma membrane | 65.42 | 64.01 |
| TraesCS7D01G297000.1 | Wheat | plasma membrane | 65.25 | 63.85 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 63.05 | 63.7 |
| TraesCS7A01G301700.1 | Wheat | plasma membrane | 64.92 | 63.52 |
| Zm00001d024587_P001 | Maize | plasma membrane | 65.08 | 63.16 |
| HORVU7Hr1G071600.2 | Barley | mitochondrion | 65.59 | 62.32 |
| EER91957 | Sorghum | plasma membrane | 62.37 | 61.85 |
| Os03t0103000-01 | Rice | cytosol, peroxisome, plasma membrane | 61.69 | 61.8 |
| TraesCS4D01G361500.1 | Wheat | peroxisome | 63.39 | 61.72 |
| TraesCS1B01G225000.1 | Wheat | plasma membrane | 62.03 | 61.51 |
| TraesCS4B01G375800.1 | Wheat | plasma membrane | 63.22 | 61.45 |
| TraesCS1B01G224900.1 | Wheat | plasma membrane | 62.03 | 61.41 |
| Zm00001d029933_P001 | Maize | cytosol, peroxisome, plasma membrane | 61.19 | 61.39 |
| TraesCS5A01G537100.1 | Wheat | peroxisome | 63.22 | 61.25 |
| TraesCS1D01G214200.1 | Wheat | plasma membrane | 61.86 | 61.24 |
| Os10t0554200-02 | Rice | plasma membrane | 61.86 | 61.24 |
| TraesCS1A01G211000.1 | Wheat | cytosol | 61.69 | 61.18 |
| Zm00001d029932_P001 | Maize | plasma membrane | 61.69 | 61.18 |
| TraesCS1D01G214300.1 | Wheat | plasma membrane | 61.53 | 61.01 |
| OQU93471 | Sorghum | plasma membrane | 62.54 | 60.99 |
| TraesCS4B01G371000.1 | Wheat | peroxisome | 62.03 | 60.7 |
| Zm00001d027285_P001 | Maize | cytosol, plasma membrane, vacuole | 61.53 | 60.5 |
| TraesCS1A01G210900.1 | Wheat | plasma membrane | 49.32 | 60.25 |
| HORVU1Hr1G053990.4 | Barley | peroxisome | 62.37 | 59.64 |
| HORVU4Hr1G088020.4 | Barley | nucleus, plasma membrane | 62.54 | 59.42 |
| GSMUA_Achr6P36750_001 | Banana | plasma membrane | 64.58 | 57.64 |
| Solyc07g032490.2.1 | Tomato | plasma membrane | 52.2 | 54.13 |
| Solyc01g096880.2.1 | Tomato | plasma membrane | 52.54 | 54.01 |
| Solyc08g061020.1.1 | Tomato | plasma membrane | 26.44 | 52.0 |
| Solyc08g061010.2.1 | Tomato | plasma membrane | 22.54 | 50.0 |
| Solyc12g006050.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 49.83 | 49.66 |
| Solyc07g049290.2.1 | Tomato | nucleus | 48.14 | 48.05 |
| HORVU1Hr1G054020.3 | Barley | mitochondrion, peroxisome, plastid | 44.24 | 47.8 |
| Solyc05g007000.2.1 | Tomato | plasma membrane | 36.78 | 38.2 |
| Solyc04g005790.2.1 | Tomato | plasma membrane | 36.44 | 37.01 |
| Solyc05g006990.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 36.61 | 36.86 |
| Solyc04g079510.1.1 | Tomato | plasma membrane | 34.92 | 36.08 |
| Solyc01g103030.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 36.27 | 35.31 |
| Solyc11g042820.1.1 | Tomato | peroxisome, plasma membrane, vacuole | 34.75 | 34.57 |
| Solyc04g079520.2.1 | Tomato | plasma membrane | 33.73 | 34.19 |
| Solyc10g039290.1.1 | Tomato | plasma membrane | 33.05 | 34.09 |
| Solyc03g005950.1.1 | Tomato | plasma membrane | 35.59 | 33.49 |
| Solyc01g102360.1.1 | Tomato | plasma membrane | 33.9 | 32.84 |
| Solyc04g079530.2.1 | Tomato | plasma membrane | 32.2 | 32.82 |
| Solyc03g113250.2.1 | Tomato | plasma membrane | 31.02 | 30.0 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.9 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006857 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| UniProt:K4CIN0 | InterPro:MFS_trans_sf | PFAM:PF00854 | InterPro:POT_fam | ScanProsite:PS01022 | ScanProsite:PS01023 |
| PANTHER:PTHR11654 | PANTHER:PTHR11654:SF78 | InterPro:PTR2_symporter_CS | SUPFAM:SSF103473 | EnsemblPlantsGene:Solyc08g007430.1 | EnsemblPlants:Solyc08g007430.1.1 |
| TMHMM:TMhelix | UniParc:UPI000276C634 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:+:1993266..1997895
Molecular Weight (calculated)
65400.2 Da
IEP (calculated)
8.896
GRAVY (calculated)
0.303
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPETQNDA KTLPDAWDYK GRPSLRSSSG GWASGAMILG VEAVERLTTL GIAVNLVTYL TGTMHLGNAT AANNVTNFLG TSFMLTLLGG FIADTFLGRY
101: LTIGIFATVQ AIGVTILTIS TIVPSLRPPK CEQGSSSCIP ANGKQLMVLY IALYMTALGT GGLKSSVSGF GTDQFDDSNE KEKGQMIKFF DWFFFFINVG
201: SLGAVTILVY VQDNLGREWG YGICACAIVI ALVLFLFGTR KYRFKKLVGS PLTQIASVFV AAWRNRHMEL PSDSSLLYEI DDNVFGEGHK KRKQKLPHSK
301: EYLFLDKAAI KEDGLESNVV NKWKVSTLTD VEEVKLLFRM LPTWATTIMF WTTYAQMTTF SVSQATTMDR HIGKSFEIPP ASLTAFFVGA ILLTVIFYDR
401: VIVPICRRFA NKRHGLTPLQ RIFIGLILSI IAMIASALTE VKRLNTAHLN GLTNDPNATI PLSVFWLIPQ FLLIGAGEAF TYIGQLDFFL RECPKGMKTM
501: STGLFLSTLA LGFFFSSILV TIVHMVTGTK HPWIADNLNQ GKLHDFYWLL AILSVLNLMV FLYTSKTYVY KEKRLAEMGI ELEDSGPVCH
101: LTIGIFATVQ AIGVTILTIS TIVPSLRPPK CEQGSSSCIP ANGKQLMVLY IALYMTALGT GGLKSSVSGF GTDQFDDSNE KEKGQMIKFF DWFFFFINVG
201: SLGAVTILVY VQDNLGREWG YGICACAIVI ALVLFLFGTR KYRFKKLVGS PLTQIASVFV AAWRNRHMEL PSDSSLLYEI DDNVFGEGHK KRKQKLPHSK
301: EYLFLDKAAI KEDGLESNVV NKWKVSTLTD VEEVKLLFRM LPTWATTIMF WTTYAQMTTF SVSQATTMDR HIGKSFEIPP ASLTAFFVGA ILLTVIFYDR
401: VIVPICRRFA NKRHGLTPLQ RIFIGLILSI IAMIASALTE VKRLNTAHLN GLTNDPNATI PLSVFWLIPQ FLLIGAGEAF TYIGQLDFFL RECPKGMKTM
501: STGLFLSTLA LGFFFSSILV TIVHMVTGTK HPWIADNLNQ GKLHDFYWLL AILSVLNLMV FLYTSKTYVY KEKRLAEMGI ELEDSGPVCH
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.