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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90240
CDY26276
CDY49976
CDY63182

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12110.1 CDX90240 AT1G30270.1 19766570
AT1G12110.1 CDY26276 AT1G30270.1 19766570
AT1G12110.1 CDY49976 AT1G30270.1 19766570
AT1G12110.1 CDY63182 AT1G30270.1 19766570
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26539 Canola plasma membrane 98.78 98.78
Bra026991.1-P Field mustard plasma membrane 98.78 96.26
CDY21035 Canola plasma membrane 95.12 94.96
CDY31242 Canola plasma membrane 94.6 94.43
CDY30051 Canola cytosol, peroxisome, plasma membrane 57.14 93.98
CDY69100 Canola plasma membrane 52.09 90.06
AT1G12110.1 Thale cress plasma membrane 91.64 89.15
Solyc08g078950.2.1 Tomato cytosol, peroxisome, plasma membrane 68.29 66.44
PGSC0003DMT400012226 Potato cytosol, peroxisome, plasma membrane 68.12 66.27
PGSC0003DMT400032493 Potato cytosol, peroxisome, plasma membrane 67.42 65.59
Solyc08g007430.1.1 Tomato cytosol, peroxisome, plasma membrane 66.9 65.08
GSMUA_Achr8P11180_001 Banana peroxisome 62.2 62.74
KRH28055 Soybean plasma membrane 63.24 61.95
KRH77380 Soybean cytosol, plasma membrane, plastid 63.24 61.95
GSMUA_Achr11P... Banana plasma membrane 60.98 61.73
EES13374 Sorghum plasma membrane 63.94 61.06
GSMUA_Achr8P11190_001 Banana peroxisome 60.1 61.06
Zm00001d029932_P001 Maize plasma membrane 62.54 60.34
Solyc06g060620.2.1 Tomato plasma membrane 62.2 60.3
EER91957 Sorghum plasma membrane 62.37 60.17
VIT_02s0154g00260.t01 Wine grape plastid 67.07 59.78
GSMUA_Achr1P20240_001 Banana plasma membrane 61.67 59.7
Os10t0554200-02 Rice plasma membrane 61.85 59.56
Zm00001d024587_P001 Maize plasma membrane 62.89 59.38
PGSC0003DMT400035882 Potato plasma membrane 61.15 59.29
Os08t0155400-01 Rice plasma membrane 54.18 59.24
Zm00001d029933_P001 Maize cytosol, peroxisome, plasma membrane 60.63 59.18
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 60.1 59.08
TraesCS1B01G224900.1 Wheat plasma membrane 61.32 59.06
TraesCS1D01G214200.1 Wheat plasma membrane 61.32 59.06
GSMUA_Achr11P... Banana peroxisome 57.84 58.97
TraesCS7D01G297000.1 Wheat plasma membrane 61.85 58.87
TraesCS7B01G201900.1 Wheat plasma membrane 61.67 58.71
KRH04097 Soybean peroxisome 60.63 58.59
TraesCS7A01G301700.1 Wheat plasma membrane 61.5 58.54
TraesCS1A01G211000.1 Wheat cytosol 60.63 58.49
TraesCS1B01G225000.1 Wheat plasma membrane 60.63 58.49
TraesCS1D01G214300.1 Wheat plasma membrane 60.28 58.15
HORVU1Hr1G053990.4 Barley peroxisome 61.67 57.37
Os03t0103000-01 Rice cytosol, peroxisome, plasma membrane 58.71 57.22
HORVU7Hr1G071600.2 Barley mitochondrion 61.85 57.17
TraesCS4D01G361500.1 Wheat peroxisome 60.28 57.1
TraesCS5A01G537100.1 Wheat peroxisome 60.28 56.81
TraesCS1A01G210900.1 Wheat plasma membrane 47.56 56.52
TraesCS4B01G371000.1 Wheat peroxisome 59.23 56.38
OQU93471 Sorghum plasma membrane 59.23 56.2
TraesCS4B01G375800.1 Wheat plasma membrane 59.41 56.18
Zm00001d027285_P001 Maize cytosol, plasma membrane, vacuole 58.36 55.83
KRH57369 Soybean plasma membrane 57.32 55.76
HORVU4Hr1G088020.4 Barley nucleus, plasma membrane 59.76 55.23
GSMUA_Achr6P36750_001 Banana plasma membrane 61.85 53.71
CDY45207 Canola golgi, plasma membrane 51.22 50.09
CDX71495 Canola plasma membrane 51.39 49.17
CDY30787 Canola mitochondrion 51.22 48.92
HORVU1Hr1G054020.3 Barley mitochondrion, peroxisome, plastid 42.33 44.51
CDY44319 Canola plasma membrane 34.84 42.46
CDY38629 Canola plasma membrane 34.84 41.75
CDY40277 Canola plasma membrane 17.6 39.61
CDY15763 Canola plasma membrane 30.49 35.79
CDY04575 Canola plasma membrane 31.71 35.14
CDY40278 Canola plasma membrane 35.19 34.59
CDY11649 Canola cytosol, peroxisome, plasma membrane 35.54 34.29
CDY28437 Canola plasma membrane 34.84 34.25
CDY52284 Canola plasma membrane 30.49 33.98
CDY52286 Canola plasma membrane 30.49 33.91
CDY50182 Canola plasma membrane 34.49 33.67
CDY65523 Canola plastid 18.82 33.33
CDX93764 Canola plasma membrane 34.84 33.33
CDY45147 Canola mitochondrion 19.16 33.13
CDY45893 Canola golgi, peroxisome, plasma membrane 26.83 32.29
CDX84348 Canola plasma membrane 31.71 32.27
CDY00323 Canola plasma membrane 31.71 32.27
CDX91126 Canola plastid 34.15 31.51
CDX85654 Canola cytosol, plasma membrane, plastid 34.15 31.51
CDY67653 Canola peroxisome 19.86 31.41
CDY38765 Canola plasma membrane 35.54 31.38
CDY70795 Canola plasma membrane 17.25 31.33
CDY15100 Canola plasma membrane 30.31 29.79
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9GO:A0A078FSY5UniProt:A0A078FSY5EnsemblPlants:CDY15967ProteinID:CDY15967
ProteinID:CDY15967.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006857
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00090351001
InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famScanProsite:PS01022ScanProsite:PS01023PANTHER:PTHR11654
PANTHER:PTHR11654:SF78InterPro:PTR2_symporter_CSSUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI0004EDF2C1SEG:seg
Description
BnaC08g41560DBnaC08g41560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSY5]
Coordinates
chrLK032060:+:36864..41327
Molecular Weight (calculated)
63357.8 Da
IEP (calculated)
8.299
GRAVY (calculated)
0.334
Length
574 amino acids
Sequence
(BLAST)
001: MSLPETKTQT LLDAWDFQGR PADRSKTGGW ASAAMILCIE AVERLTTLGI GVNLVTYLTG TMHLGNATAA NTVTNFLGTS FMLCLLGGFI ADTFLGRYLT
101: IAIFAAIQAT GVSILTLSTI IPGLRPPRCD PTTSSHCVQA SGIQLTVLYL ALYLTALGTG GVKASVSGFG SDQFDETEPK ERSQMTYFFN RFFFCINVGS
201: LLAVTVLVYI QDDVGRKWGY GICALAIVLS LSIFLAGTNR YRFKKLIGSP MTQVATVLVA AWRNRRLELP SDPSFLYDLD DVIAAEGSMK SKQKLPHTKQ
301: FRSLDKAAIK DQEMAMTQNV HNKWTLSTVT DIEEVKQIVR MLPIWATCIL FWTVHAQLTT LSVAQSETMD RHIGSFEIPP AAMAVFYIGG LLLTTAVYDR
401: LAIPLCKKLF NYPHATGMAV AALVEIKRLR TAHAHGPTVK TLPLGFSLLI PQYLIVGIGE ALIYTGQLDF FLRECPKGMK TMSTGLLLST LALGFFFSSV
501: LVTIVEKVTD KAHPWIADDL NKGRLYNFYW LVAIIVALNF LVFLVFSKWY VYKEKRLADL GIELEDEPDI PMGH
Best Arabidopsis Sequence Match ( AT1G12110.1 )
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.