CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011937.1-P	Field mustard	plasma membrane	98.65	98.65
CDY15763	Canola	plasma membrane	90.93	96.32
AT3G25280.1	Thale cress	plasma membrane	74.52	74.09
CDY52286	Canola	plasma membrane	64.67	64.92
CDY52284	Canola	plasma membrane	64.29	64.66
CDY15100	Canola	plasma membrane	62.36	55.31
CDY40277	Canola	plasma membrane	21.24	43.14
CDY40278	Canola	plasma membrane	42.66	37.84
CDY28437	Canola	plasma membrane	42.47	37.67
CDY00323	Canola	plasma membrane	39.77	36.52
CDX84348	Canola	plasma membrane	39.58	36.35
CDY11649	Canola	cytosol, peroxisome, plasma membrane	40.73	35.46
CDY69100	Canola	plasma membrane	21.81	34.04
CDY30051	Canola	cytosol, peroxisome, plasma membrane	22.78	33.81
CDY65523	Canola	plastid	20.46	32.72
CDY45147	Canola	mitochondrion	20.85	32.53
CDY31242	Canola	plasma membrane	36.1	32.52
CDY38765	Canola	plasma membrane	40.73	32.46
CDY21035	Canola	plasma membrane	35.91	32.35
CDY26539	Canola	plasma membrane	35.14	31.71
CDY15967	Canola	plasma membrane	35.14	31.71
CDY50182	Canola	plasma membrane	35.91	31.63
CDX93764	Canola	plasma membrane	36.49	31.5
CDY45893	Canola	golgi, peroxisome, plasma membrane	27.61	29.98
CDY45207	Canola	golgi, plasma membrane	33.59	29.64
CDY30787	Canola	mitochondrion	33.98	29.28
CDX71495	Canola	plasma membrane	33.78	29.17
CDY70795	Canola	plasma membrane	17.76	29.11
CDY67653	Canola	peroxisome	19.69	28.1
CDY44319	Canola	plasma membrane	25.48	28.03
CDY38629	Canola	plasma membrane	25.48	27.56
CDX91126	Canola	plastid	29.54	24.6
CDX85654	Canola	cytosol, plasma membrane, plastid	29.54	24.6

Protein Annotations

Gene3D:1.20.1250.20	MapMan:11.1.4.1	MapMan:24.2.2.9	GO:A0A078ERR0	EnsemblPlants:CDY04575	ProteinID:CDY04575
ProteinID:CDY04575.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00118768001	InterPro:MFS_trans_sf	PFAM:PF00854
InterPro:POT_fam	PFscan:PS51257	PANTHER:PTHR11654	PANTHER:PTHR11654:SF165	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0004EEAAF5	SEG:seg	:	:	:	:

Description

BnaA07g14010D

Coordinates

chrLK031955:-:966974..968792

Molecular Weight (calculated)

57602.6 Da

IEP (calculated)

6.257

GRAVY (calculated)

0.454

Length

518 amino acids

Sequence
(BLAST)

001: MKNEIEERFE DWKGREAIPG KHGGIGPAAI ACVVEVMENI VFVANGFNFV EYFMSSMHYS PATAANMVTN FMGTTFLLTL LGGFIADSFL TNFTTFIIFC
101: CLELMGLILL TFQSYSPKLQ PESDKTPSTL QATILFTGLY AMAFGAGGIK ASLPTHGGDQ LDRGNPRLIS RFFNWFYFSI CCGSILAVTI VVSIEESKGW
201: FWSFTISAGT LALALFIFMA GLPFYRFKSP TGSSLTRITK VIVSAARNRN KSALDEEMMQ SLISTDEGIS HNKLKCLDKA MLNKNISAIE VAETRTFLGL
301: LPIFFSTIAM NCCLAQLSTF SVQQGMIMDR KLFGSFEIPV PSLVAIPLLL VILSAPLYDY FEKRISLDIS PSFNLYRIRL GLALSSFSMV IAAIVETTRK
401: YVAVHSDFKI SVLWLMVQYL LLTVADTLAF GGMLDFFYRE APSNMKSMST ALGWCSTAFG FFLSTALVEV TNTITGWLGH QWLGGEDLNE TSLELFYVVL
501: FVLNTLNLLN YNFWMKGY

Best Arabidopsis Sequence Match ( AT3G25280.1 )
(BLAST)

001: MENDMEEKFE DWKGKEAIPG KHGGIRAASI VCVVVMMENI VFIANGFNFV KYFMGSMHYT PATAANMVTN FMGTSFLLTL FGGFIADSFV THFTTFIVFC
101: CIELMGLILL TFQAHNPKLL PEKDKTPSTL QSAILFTGLY AMAIGTGGLK ASLPSHGGDQ IDRRNPRLIS RFFDWLYFSI CSGCLLAVTV VLWIEEKKGW
201: IWSFNISVGI LATALCIFTV GLPFYRFKRP NGSPLKKIAI VIISAARNRN KSDLDEEMMR GLISIYKNNS HNKLKWIDKA TLNKNISETE VEETRTFLGL
301: LPIFGSTIVM SCCVAQLSTF SAQQGMLMNK KLFHSFEIPV PSLTAIPLIF MLLSIPLYEF FGKKISSGNN NRSSSFNLKR IGLGLALSSV SMAVSAIVEA
401: KRKHEVVHNN FRISVLWLVF QYLMLSVSDM LTLGGMLEFF YREAPSNMKS ISTALGWCST ALGFFLSTTL VEVTNAVTGR LGHQWLGGED LNKTRLELFY
501: VLLCVLNTLN LLNYIFWAKR Y

Arabidopsis Description

NPF4.2Protein NRT1/ PTR FAMILY 4.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.