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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 1
  • golgi 1
  • plasma membrane 3
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11649 Canola cytosol, peroxisome, plasma membrane 90.0 98.32
AT1G69850.1 Thale cress plasma membrane 82.62 91.79
CDY40277 Canola plasma membrane 30.62 78.04
CDY40278 Canola plasma membrane 68.46 76.2
CDY28437 Canola plasma membrane 67.54 75.17
GSMUA_Achr7P08880_001 Banana plasma membrane 59.85 70.34
Os06t0581000-01 Rice plasma membrane 60.62 66.78
Zm00001d046383_P001 Maize plasma membrane 60.31 66.22
TraesCS7A01G365100.1 Wheat plasma membrane 59.08 65.42
EER89980 Sorghum plasma membrane 60.15 64.95
CDX84348 Canola plasma membrane 55.69 64.18
CDY00323 Canola plasma membrane 55.69 64.18
Zm00001d036942_P001 Maize plasma membrane 52.77 63.52
TraesCS7D01G357300.2 Wheat plasma membrane 59.85 62.95
GSMUA_Achr2P16840_001 Banana plasma membrane, plastid 57.85 62.35
Zm00001d036941_P001 Maize plasma membrane 58.31 62.23
HORVU7Hr1G086170.5 Barley cytosol, peroxisome, plastid 60.15 61.97
GSMUA_Achr6P00820_001 Banana plasma membrane 58.92 60.6
TraesCS7B01G262200.1 Wheat plasma membrane, plastid 60.15 56.67
CDY52284 Canola plasma membrane 33.54 42.33
CDY52286 Canola plasma membrane 33.08 41.67
CDY15763 Canola plasma membrane 30.77 40.9
CDY04575 Canola plasma membrane 32.46 40.73
CDY65523 Canola plastid 19.08 38.27
CDY45147 Canola mitochondrion 19.23 37.65
CDY50182 Canola plasma membrane 33.85 37.41
CDX93764 Canola plasma membrane 34.31 37.17
CDY15100 Canola plasma membrane 33.23 36.99
CDY45893 Canola golgi, peroxisome, plasma membrane 27.08 36.9
CDY30051 Canola cytosol, peroxisome, plasma membrane 19.23 35.82
CDY45207 Canola golgi, plasma membrane 32.31 35.78
CDY44319 Canola plasma membrane 25.85 35.67
CDY15967 Canola plasma membrane 31.38 35.54
CDY26539 Canola plasma membrane 31.38 35.54
CDX71495 Canola plasma membrane 32.62 35.33
CDY30787 Canola mitochondrion 32.62 35.27
CDY38629 Canola plasma membrane 25.85 35.07
CDY70795 Canola plasma membrane 16.92 34.81
CDY31242 Canola plasma membrane 30.77 34.78
CDY21035 Canola plasma membrane 30.77 34.78
CDY69100 Canola plasma membrane 17.23 33.73
CDY67653 Canola peroxisome 18.31 32.78
CDX91126 Canola plastid 29.08 30.39
CDX85654 Canola cytosol, plasma membrane, plastid 28.92 30.23
Protein Annotations
Gene3D:1.20.1250.20MapMan:11.1.4.1MapMan:24.2.2.9GO:A0A078HJS5UniProt:A0A078HJS5EnsemblPlants:CDY38765
ProteinID:CDY38765ProteinID:CDY38765.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00066559001
InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_famPANTHER:PTHR11654PANTHER:PTHR11654:SF98SUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI0004EEBB45SEG:seg:::
Description
BnaA07g28370DBnaA07g28370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJS5]
Coordinates
chrLK032432:-:82913..87358
Molecular Weight (calculated)
71881.9 Da
IEP (calculated)
9.093
GRAVY (calculated)
0.295
Length
650 amino acids
Sequence
(BLAST)
001: MKSFSNNKEG PNSPFLSPNW TLSQCLLSSI YLNFINTLLT FTYIYFLIIK TSIFTSSPQS LRERKKERIM EVEEEVSRWE GYADWRNKAA VKGRHGGMLA
101: ASFTLVVEIL ENLAYLANAS NLVLYLREYM HLSPSKSAND VTNFMGTAFL LALLGGFLSD AFFSTYVIFL ISASIEFLGL IILTIQARTP SLMPPTCDGP
201: TCESVSGSKA AMLFVGLYLV ALGVGGIKGS LPSHGAEQFD ESTPKGRKQR STYFNYFVFC LACGALVAVT FVVWLEDNKG WEWGFGVSTI AIFVSILIFL
301: SGSKFYRNKI PCGSPLTTIL KVLLAASVKS CSSGSPSNAV VNLAISPSNH LKEVTESGEL EKPRHQEPVP PPQTQLTNSL RFLNRAAEEK PDHKLLECTI
401: QQVEDVKIVL KMLPIFACTI MLNCCLAQLS TFSVQQAASM NTKIGSLKIP PASLPVFPVV FIMILAPIYD HLIIPFARKT TKTETGVTHL QRIGVGLVLS
501: ILAMAVAALV EIKRKGVAKD AGLLDSKETL PITFLWIALQ YLFLGSADLF TLAGLLEYFF TEAPASMRSL ATSLSWASLA MGYYLSSVIV SIVNSITGSS
601: GNRPWLRGER INRYKLDYFY WLMCVLSAAN FLHYLFWAMR YKYRSTGSRS
Best Arabidopsis Sequence Match ( AT1G69850.1 )
(BLAST)
001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
Arabidopsis Description
NPF4.6Protein NRT1/ PTR FAMILY 4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H157]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.