CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
BaCelLo:	cytosol
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52284	Canola	plasma membrane	84.93	96.31
CDY52286	Canola	plasma membrane	79.97	90.5
AT3G25260.1	Thale cress	plasma membrane	67.98	77.09
CDY04575	Canola	plasma membrane	55.31	62.36
CDY15763	Canola	plasma membrane	51.71	61.76
CDY40277	Canola	plasma membrane	17.64	40.39
CDY00323	Canola	plasma membrane	35.45	36.7
CDX84348	Canola	plasma membrane	35.1	36.35
CDY11649	Canola	cytosol, peroxisome, plasma membrane	36.99	36.3
CDY40278	Canola	plasma membrane	36.3	36.3
CDY28437	Canola	plasma membrane	36.3	36.3
CDY38765	Canola	plasma membrane	36.99	33.23
CDY69100	Canola	plasma membrane	18.49	32.53
CDY30051	Canola	cytosol, peroxisome, plasma membrane	19.18	32.09
CDY50182	Canola	plasma membrane	31.51	31.29
CDY65523	Canola	plastid	17.29	31.17
CDY45147	Canola	mitochondrion	17.64	31.02
CDX93764	Canola	plasma membrane	31.85	31.0
CDY21035	Canola	plasma membrane	30.48	30.96
CDY31242	Canola	plasma membrane	30.31	30.78
CDY70795	Canola	plasma membrane	16.44	30.38
CDY45207	Canola	golgi, plasma membrane	30.48	30.32
CDY26539	Canola	plasma membrane	29.79	30.31
CDY15967	Canola	plasma membrane	29.79	30.31
CDX71495	Canola	plasma membrane	30.99	30.17
CDY30787	Canola	mitochondrion	30.99	30.12
CDY45893	Canola	golgi, peroxisome, plasma membrane	23.63	28.93
CDY67653	Canola	peroxisome	17.12	27.55
CDY44319	Canola	plasma membrane	21.92	27.18
CDY38629	Canola	plasma membrane	21.92	26.72
CDX91126	Canola	plastid	27.4	25.72
CDX85654	Canola	cytosol, plasma membrane, plastid	27.23	25.56

Protein Annotations

Gene3D:1.20.1250.20	MapMan:11.1.4.1	MapMan:24.2.2.9	GO:A0A078FKX8	UniProt:A0A078FKX8	EnsemblPlants:CDY15100
ProteinID:CDY15100	ProteinID:CDY15100.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00085252001
InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	InterPro:PDDEXK-like	PFAM:PF00854	PFAM:PF04720
InterPro:POT_fam	PANTHER:PTHR11654	PANTHER:PTHR11654:SF165	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0004EE1F93
SEG:seg	:	:	:	:	:

Description

BnaC03g44610DBnaC03g44610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKX8]

Coordinates

chrLK032051:-:570219..573105

Molecular Weight (calculated)

64912.8 Da

IEP (calculated)

9.557

GRAVY (calculated)

0.219

Length

584 amino acids

Sequence
(BLAST)

001: MQNEMEEKFE DWRGKEAIPG KHGGIRAASI ACVVEMMENM VFLACSTNFI TYFTKSWHYS SAKASNMVTN FTGTSFLLTI IGGFVADSFL TRFTAFVIFC
101: SIELLGLILL TIQAHTPKLQ PHGDNTPSTL QSLVLFTGLY AVATGVGGVK ASLPAHGGDQ LDSRKQGLIS GFFSWYFFSI CFGGLLAVTI MVWTEENKGW
201: SSSFDICTVI LASALFIFTV GFPMYRFRRP TGSPLTRIVN VFVSAARNRN RFVTDAEITL NNSTDKSIHH NKFKFLNKAK LNNKISATEV EETRTFLALL
301: PIFASTIVMN CCLAQLSTYS VQQGMLMNRK LSKSFEVPPA SLNTIALLFM LSSIAFYELF GKRISSSNNE RSSCFNLKRI GTGLALTSVA MAIAAIVEAK
401: RKHEAVHNSI KISVFWLEFQ YVLLSFSDVL TLGGMLEFFY RESPASMKSI STALGWFSTA LGFFLSTVLV DVTKSVTGWL DGEDVNGSRL ELFYALLPRV
501: FVGKEENLRT IVRESCVAAN WSLKSRGLSL PPWRRFSYLQ HKWFGLCTRR AGSSLEVTTL NKDAVSCRSV GFDDAVNARL FIRT

Best Arabidopsis Sequence Match ( AT3G25260.1 )
(BLAST)

001: MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG
101: SIELLGLIML TLQAHITKLQ PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV CLGGFLAVTL MVWIEENIGW
201: SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA
301: LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV
401: KRKHEAVHNN IKISVFWLEL QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW LRDDLNESRL ELFYLVLCVL
501: NTLNLFNYIF WAKRY

Arabidopsis Description

NPF4.1Protein NRT1/ PTR FAMILY 4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.